View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3683_high_25 (Length: 329)

Name: NF3683_high_25
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3683_high_25
NF3683_high_25
[»] chr1 (2 HSPs)
chr1 (20-320)||(26857669-26857969)
chr1 (90-176)||(3330527-3330613)
[»] chr5 (6 HSPs)
chr5 (81-268)||(25095991-25096181)
chr5 (81-269)||(25098768-25098956)
chr5 (81-268)||(25153961-25154151)
chr5 (81-269)||(25157858-25158046)
chr5 (92-310)||(31250752-31250970)
chr5 (126-154)||(32200142-32200170)
[»] chr8 (2 HSPs)
chr8 (79-310)||(18001895-18002126)
chr8 (126-174)||(10019469-10019517)
[»] chr3 (5 HSPs)
chr3 (86-310)||(30375877-30376101)
chr3 (220-306)||(25131802-25131888)
chr3 (85-189)||(44121382-44121486)
chr3 (241-310)||(23921346-23921415)
chr3 (118-171)||(30406150-30406203)
[»] chr6 (1 HSPs)
chr6 (36-310)||(10383195-10383468)
[»] chr4 (6 HSPs)
chr4 (52-310)||(7635645-7635904)
chr4 (95-310)||(5883078-5883294)
chr4 (85-176)||(50371648-50371739)
chr4 (57-153)||(19719208-19719305)
chr4 (245-309)||(50371808-50371872)
chr4 (253-310)||(7320603-7320660)
[»] chr7 (2 HSPs)
chr7 (57-310)||(33879787-33880040)
chr7 (85-310)||(8914678-8914903)
[»] scaffold0008 (1 HSPs)
scaffold0008 (103-310)||(42005-42212)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 26857669 - 26857969
Alignment:
Q  20 tatctcctaacacaaagtgtgtcaaaggatatagcatatatttacagcaacgtttcattaaaaataacaatgattagcctatacccaaacttaagaaggg 119  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||    
T  26857669 tatcccctaacacaaggtgtgtcaaaggatatagcatatatttacagcaacgtttcattaaaaataacaatgattagcccatacccaaacttaaaaacgg 26857768  T
Q  120 gttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgccacggataagaaagtagactgatgtactccaaaagttgcgaaggt 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26857769 gttctagcaccaatcataaaacttataatgaaaaattacaaattttgctttatgccacggataagaaagtagactgatgtactccaaaagttgcgaaggt 26857868  T
Q  220 gagttttctttggttcgaaaaagtttatcgttcctttccttccaaataactcacgaaatagcaaaccaaattaagtgcataaaagaacaccctacctatg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  26857869 gagttttctttggttcgaaaaagtttatcgttcctttccttccaaataactcacgaagtagcaaaccaaattaagtgcataaaaaaacaccccacctatg 26857968  T
Q  320 c 320  Q
    |    
T  26857969 c 26857969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 3330527 - 3330613
Alignment:
Q  90 tgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgcca 176  Q
    ||||||||||||||||||||  || || | ||| | ||||||||||||||||||||||| |||| | |||||||||| |||||||||    
T  3330527 tgattagcctatacccaaacacaaaaacgagttttggcaccaatcatgaaacttataattaaaactaacaaattttgttttatgcca 3330613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 81 - 268
Target Start/End: Original strand, 25095991 - 25096181
Alignment:
Q  81 aaataacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaa---aattacaaattttgctttatgccac 177  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||   ||||||  ||||||||||||  |||    
T  25095991 aaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaattacggattttgctttataacac 25096090  T
Q  178 ggataagaaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataa 268  Q
    ||| ||| |||||| |||||||||||| |||| |||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  25096091 ggaaaagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcctttccttccaaataa 25096181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 81 - 269
Target Start/End: Original strand, 25098768 - 25098956
Alignment:
Q  81 aaataacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgccacgga 180  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||  ||||||    
T  25098768 aaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcataaaacttataataaaaaattacagattttgctttataacacgga 25098867  T
Q  181 taagaaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataac 269  Q
     ||| |||||| ||||||||||||||||| || |||| |||||||||||||||| | |||||| |||| |||||||||||| |||||||    
T  25098868 aaagtaagtagcctgatgtactccaaaagctgtgaagatgagttttctttggtttggaaaagtctatcattcctttccttcaaaataac 25098956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 81 - 268
Target Start/End: Original strand, 25153961 - 25154151
Alignment:
Q  81 aaataacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaa---aattacaaattttgctttatgccac 177  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||   ||||||  ||||||||||||  |||    
T  25153961 aaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaattacggattttgctttataacac 25154060  T
Q  178 ggataagaaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataa 268  Q
    ||| ||| |||||| |||||||||||| |||| |||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  25154061 ggaaaagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcctttccttccaaataa 25154151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 81 - 269
Target Start/End: Original strand, 25157858 - 25158046
Alignment:
Q  81 aaataacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgccacgga 180  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||  ||||||    
T  25157858 aaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcataaaacttataataaaaaattacagattttgctttataacacgga 25157957  T
Q  181 taagaaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataac 269  Q
     ||| |||||| ||||||||||||||||| || |||| |||||||||||||||| | |||||| |||| |||||||||||| |||||||    
T  25157958 aaagtaagtagcctgatgtactccaaaagctgtgaagatgagttttctttggtttggaaaagtctatcattcctttccttcaaaataac 25158046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 92 - 310
Target Start/End: Complemental strand, 31250970 - 31250752
Alignment:
Q  92 attagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgccacggataagaaagtag 191  Q
    ||||||| |||||||||| |||||| ||||| | ||||||||||||| ||||| |||   || |||||||||||||||||||||||| | ||||||| ||    
T  31250970 attagcccatacccaaacataagaaagggttatggcaccaatcatgatacttaaaataggaagttacaaattttgctttatgccacgaaaaagaaagaag 31250871  T
Q  192 actgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataactcacgaaatagcaaaccaaatt 291  Q
     || |||| ||||||||| ||   |   ||||||||||||||||| |||||| | ||||||||||||||||| ||||| |||||| | ||||| ||||||    
T  31250870 cctaatgttctccaaaagctgaacaaaggagttttctttggttcggaaaagtctttcgttcctttccttccatataacccacgaagttgcaaagcaaatt 31250771  T
Q  292 aagtgcataaaagaacacc 310  Q
    || ||||||||||||||||    
T  31250770 aaatgcataaaagaacacc 31250752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 32200170 - 32200142
Alignment:
Q  126 gcaccaatcatgaaacttataatgaaaaa 154  Q
    |||||||||||||||||||||||||||||    
T  32200170 gcaccaatcatgaaacttataatgaaaaa 32200142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 79 - 310
Target Start/End: Complemental strand, 18002126 - 18001895
Alignment:
Q  79 aaaaataacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaatta-caaattttgctttatgccac 177  Q
    ||||| ||||||||||||||||||||||||  ||||||  |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||     
T  18002126 aaaaagaacaatgattagcctatacccaaatataagaacaggttctggcaccaatcatgaaacttataat-aaaaattagcaaattttgctttatgccaa 18002028  T
Q  178 ggataagaaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataactcacgaaa 277  Q
    | | ||||||| || |||| || ||||||||  ||   |  |||| ||||||||||||  |||||| |||||||| |||||||||||||||| ||||||     
T  18002027 gaaaaagaaaggagcctgaggttctccaaaatctgacgacatgagctttctttggttcagaaaagtctatcgttcatttccttccaaataacccacgaag 18001928  T
Q  278 tagcaaaccaaattaagtgcataaaagaacacc 310  Q
    | |||||| ||||||  | ||||||||||||||    
T  18001927 tggcaaacaaaattatatacataaaagaacacc 18001895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 10019469 - 10019517
Alignment:
Q  126 gcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgc 174  Q
    ||||||||||||||||||||||| |||| |  |||||||||||||||||    
T  10019469 gcaccaatcatgaaacttataattaaaactagcaaattttgctttatgc 10019517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 86 - 310
Target Start/End: Original strand, 30375877 - 30376101
Alignment:
Q  86 acaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgccacggataaga 185  Q
    ||||||||||||||||| ||||||  ||||| ||||||| ||||||||||  ||||||||||| |||| |  ||||||||||||||||||| | | ||||    
T  30375877 acaatgattagcctatatccaaacacaagaacgggttctggcaccaatcaaaaaacttataattaaaactagcaaattttgctttatgccatgaaaaaga 30375976  T
Q  186 aagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataactcacgaaatagcaaac 285  Q
     ||||| || |||| |||||||||||| |||   ||| ||| ||||||| |||||| | |||| ||| |||||||||||||||| |||||| | ||||||    
T  30375977 gagtagcctaatgttctccaaaagttgagaaaaggagctttgtttggtttgaaaaattctatcattcatttccttccaaataacccacgaagttgcaaac 30376076  T
Q  286 caaattaagtgcataaaagaacacc 310  Q
    |||||||||| ||| ||||||||||    
T  30376077 caaattaagtacatgaaagaacacc 30376101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 25131802 - 25131888
Alignment:
Q  220 gagttttctttggttcgaaaaagtttatcgttcctttccttccaaataactcacgaaatagcaaaccaaattaagtgcataaaagaa 306  Q
    ||||||||||||||||  |||||| | ||||||||||||||||||||||| |||||  | |||||||||||||||||||||||||||    
T  25131802 gagttttctttggttcagaaaagtctgtcgttcctttccttccaaataacccacgatgttgcaaaccaaattaagtgcataaaagaa 25131888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 44121382 - 44121486
Alignment:
Q  85 aacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgccacggataag 184  Q
    |||||||||||| ||||||| |||| ||||||  ||||||||||| |||||||||||||| ||| |||| || ||||||||||||||||||| | | |||    
T  44121382 aacaatgattagactatacctaaacataagaacaggttctagcactaatcatgaaacttaaaattaaaacttgcaaattttgctttatgccatgaaaaag 44121481  T
Q  185 aaagt 189  Q
    |||||    
T  44121482 aaagt 44121486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 23921346 - 23921415
Alignment:
Q  241 agtttatcgttcctttccttccaaataactcacgaaatagcaaaccaaattaagtgcataaaagaacacc 310  Q
    ||||| || |||||||||||| ||||||| || ||| | |||||||| ||||||||||||||||||||||    
T  23921346 agtttgtcattcctttccttctaaataacccatgaagttgcaaaccagattaagtgcataaaagaacacc 23921415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 30406150 - 30406203
Alignment:
Q  118 gggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgcttta 171  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||| ||||||    
T  30406150 gggttctggcaccaatcatgaaacttataatgaaaaacaacaaatttagcttta 30406203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 36 - 310
Target Start/End: Complemental strand, 10383468 - 10383195
Alignment:
Q  36 gtgtgtcaaaggatatagcatatatttacagcaacgtttcattaaaaataacaatgattagcctatacccaaacttaagaaggggttctagcaccaatca 135  Q
    ||||| |||| || |||||| |||  |||| ||| |||||| ||  ||||| |||  ||||||||| ||||||| | ||||  |||| | ||||||||||    
T  10383468 gtgtggcaaaagagatagcaaataactacaacaatgtttcaatagtaataataatagttagcctattcccaaacatgagaacaggttttggcaccaatca 10383369  T
Q  136 tgaaacttataatgaaaaattacaaattttgctttatgccacggataagaaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttc 235  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||| ||  |||||| ||||| |||    ||||||| ||||||||||| ||    
T  10383368 tgaaacttataatgataaattacaaatttagctttataccacgaataagaaagaagcatgatgttctccagaag-caagaaggtgtgttttctttggctc 10383270  T
Q  236 gaaaaagtttatcgttcctttccttccaaataactcacgaaatagcaaaccaaattaagtgcataaaagaacacc 310  Q
    | |||||| || | ||||||||||| |||||||  |||||| ||| ||||||||||||  |||||||||||||||    
T  10383269 ggaaaagtctagcattcctttcctttcaaataatccacgaactagtaaaccaaattaaaagcataaaagaacacc 10383195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 52 - 310
Target Start/End: Complemental strand, 7635904 - 7635645
Alignment:
Q  52 agcatatatttacagcaacgtttcattaaaaat-aacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatga 150  Q
    |||| ||||||||||||| || |||  || ||| |||||||||||||||||||||||||  ||||| | |||||  |||||||||||||||||||||| |    
T  7635904 agcaaatatttacagcaaagtatcaacaagaatgaacaatgattagcctatacccaaacacaagaacgagttctgacaccaatcatgaaacttataatta 7635805  T
Q  151 aaaattacaaattttgctttatgccacggataagaaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgt 250  Q
    ||| |  || ||||||||||||||||   | |||| ||||| || |||| ||||||||| || | |  |||| | | ||| ||||  || ||| | || |    
T  7635804 aaactagcacattttgctttatgccaataaaaagagagtagcctaatgttctccaaaagctgaggaaatgagctctgttttgttctgaagagtctgtcat 7635705  T
Q  251 tcctttccttccaaataactcacgaaatagcaaaccaaattaagtgcataaaagaacacc 310  Q
    ||||||||||||||||||| || ||| | ||||||||||||||||| |||||||||||||    
T  7635704 tcctttccttccaaataacccatgaagttgcaaaccaaattaagtgaataaaagaacacc 7635645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 310
Target Start/End: Original strand, 5883078 - 5883294
Alignment:
Q  95 agcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgccacggataagaaagtagact 194  Q
    |||||||||||||||  ||||| ||||||| |||||||||||| |||||||||| |||| |  |||||||||||||||||||   | |||| ||||| ||    
T  5883078 agcctatacccaaacacaagaacgggttctggcaccaatcatgtaacttataattaaaactagcaaattttgctttatgccaataaaaagagagtagcct 5883177  T
Q  195 gatgtactccaaaagttgcgaaggtgagtttt-ctttggttcgaaaaagtttatcgttcctttccttccaaataactcacgaaatagcaaaccaaattaa 293  Q
     |||| ||||||||| || | |   |||||||  |||| ||   |||| | ||||  || |||||||||||||||| || ||| | |||||| |||||||    
T  5883178 aatgttctccaaaagctggggaaaggagttttgttttgtttttgaaaattctatcaatcatttccttccaaataacccatgaagttgcaaactaaattaa 5883277  T
Q  294 gtgcataaaagaacacc 310  Q
    |||||| ||||||||||    
T  5883278 gtgcatgaaagaacacc 5883294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 50371648 - 50371739
Alignment:
Q  85 aacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgcca 176  Q
    |||||||||||||||||||||||||  ||||| || || | ||||||||||||||||||||||| |||| |  |||| ||||||||||||||    
T  50371648 aacaatgattagcctatacccaaacacaagaacggattatggcaccaatcatgaaacttataattaaaactagcaaactttgctttatgcca 50371739  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 19719305 - 19719208
Alignment:
Q  57 atatttacagcaacgtttcattaaaaat-aacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaa 153  Q
    ||||||||||||| || |||  || ||| |||||||||||| ||||||||||||  |||||  |||||  ||||||||||| ||||||||||| ||||    
T  19719305 atatttacagcaaagtatcaacaagaatgaacaatgattagtctatacccaaacacaagaacaggttcgggcaccaatcataaaacttataattaaaa 19719208  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 50371808 - 50371872
Alignment:
Q  245 tatcgttcctttccttccaaataactcacgaaatagcaaaccaaattaagtgcataaaagaacac 309  Q
    |||| ||| ||||||||||||| || || ||| | |||||||||||||||||||| |||||||||    
T  50371808 tatcattcatttccttccaaatgacccatgaagttgcaaaccaaattaagtgcatgaaagaacac 50371872  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 7320660 - 7320603
Alignment:
Q  253 ctttccttccaaataactcacgaaatagcaaaccaaattaagtgcataaaagaacacc 310  Q
    |||||||| |||||||| |||||| ||||||||||||| |  ||||| ||||||||||    
T  7320660 ctttcctttcaaataacccacgaactagcaaaccaaatcagatgcattaaagaacacc 7320603  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 310
Target Start/End: Original strand, 33879787 - 33880040
Alignment:
Q  57 atatttacagcaacgtttcattaaaaataacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaatt 156  Q
    ||||||||| ||| ||||||  ||||  | |||||||||||||||||| ||||  ||||| || ||||  |||||||||||||||||||||| |||| |     
T  33879787 atatttacaacaatgtttcaacaaaatgatcaatgattagcctatacctaaacacaagaacggattctgccaccaatcatgaaacttataattaaaacta 33879886  T
Q  157 acaaattttgctttatgccacggataagaaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttccttt 256  Q
     ||||||||| ||||||||| | | |||| ||||| || |||| || |||||| || |||    || |||  |||||||| |||| | |||| ||| |||    
T  33879887 gcaaattttggtttatgccaagaaaaagagagtagcctaatgttcttcaaaagctgagaaaagaagctttgattggttcggaaaattctatcattcattt 33879986  T
Q  257 ccttccaaataactcacgaaatagcaaaccaaattaagtgcataaaagaacacc 310  Q
     |||| ||||||| |||||| | |||||||||||||||||||| ||||||||||    
T  33879987 tcttctaaataacccacgaagttgcaaaccaaattaagtgcatgaaagaacacc 33880040  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 310
Target Start/End: Original strand, 8914678 - 8914903
Alignment:
Q  85 aacaatgattagcctatacccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgccacggataag 184  Q
    ||||||||||| |||||||||||||  ||||| | |||||  |||||||||| ||||||||||| |||| |  || ||||||||||||||||   | |||    
T  8914678 aacaatgattaacctatacccaaacacaagaacgagttctgacaccaatcataaaacttataattaaaactagcacattttgctttatgccaataaaaag 8914777  T
Q  185 aaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataactcacgaaatagcaaa 284  Q
    | ||||| || |||| ||||||||| || | |   ||| ||| |||  |||  || ||  | || |||||||||||||| ||||| || ||| | |||||    
T  8914778 agagtagcctaatgttctccaaaagctgaggaaaggagctttgttttattctgaagagactctcattcctttccttccacataacccatgaagttgcaaa 8914877  T
Q  285 ccaaattaagtgcataaaagaacacc 310  Q
    |||||||||||| |||||||||||||    
T  8914878 ccaaattaagtgaataaaagaacacc 8914903  T

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Target: scaffold0008 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 310
Target Start/End: Complemental strand, 42212 - 42005
Alignment:
Q  103 cccaaacttaagaaggggttctagcaccaatcatgaaacttataatgaaaaattacaaattttgctttatgccacggataagaaagtagactgatgtact 202  Q
    ||||||| |||||| |||||||  |||||||||||||||||| ||  | |  |||||| |||||||||||||| || ||||||||| || || |||| ||    
T  42212 cccaaacataagaaagggttctgacaccaatcatgaaacttaaaaaaagacgttacaagttttgctttatgccgcgaataagaaagaagcctaatgttct 42113  T
Q  203 ccaaaag-ttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataactcacgaaatagcaaaccaaattaagtgcataa 301  Q
    ||||||| ||   || | |||||||||||| |||| |||||| ||| |||| |||| ||||||||||| ||| |  | ||||||||||||||||||||||    
T  42112 ccaaaagcttaacaaag-gagttttctttgcttcggaaaagtctattgttcttttctttccaaataacccacaatgttgcaaaccaaattaagtgcataa 42014  T
Q  302 aagaacacc 310  Q
    |||||||||    
T  42013 aagaacacc 42005  T

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