View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3683_high_26 (Length: 316)
Name: NF3683_high_26
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 8762751 - 8762451
Alignment:
| Q |
1 |
tcagagagctctagaatcaaggtttgcatcaagtcttccgagttctgtgatcagagaaatcgaagaaaaaagaacaaacaaacttcttgcgccaacactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8762751 |
tcagagagctctagaatcaaggtttgcatcaagtcttccgagttctgtgatcagagaaatcgaagaaaaaagaacaaacaaacttcttgcgccaacactt |
8762652 |
T |
|
| Q |
101 |
caatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatcatgttgaccaattcccttaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8762651 |
caatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatcatgttgaccaattcccttaca |
8762552 |
T |
|
| Q |
201 |
tacaaaaagggttggctcttcaagatttggaacaagttaggcttggaaaatcgaagttggaagccaatgctgttgcggagaataatgggcatggtcaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||| |||||| |
|
|
| T |
8762551 |
tacaaaaagggttggctcttcaagatttggaacaagttaggcttggaaaatcaaagttggaagccaatgctgttgtggagaatagtggccatgatcaaaa |
8762452 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
8762451 |
c |
8762451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 8789137 - 8789054
Alignment:
| Q |
101 |
caatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatcatgtt |
184 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
8789137 |
caatgtttgcatacactggcatatcaaacaagaggtacaaacaatgtttttaaccattttaaccaatttccaacacatcatgtt |
8789054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 8789050 - 8788982
Alignment:
| Q |
233 |
caagttaggcttggaaaatcgaagttggaagccaatgctgttgcggagaataatgggcatggtcaaaac |
301 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| ||| |||||||||||||||||| |||||||||||| |
|
|
| T |
8789050 |
caagttaggcttgtaaaatcaaagttggaagccgatgttgttgcggagaataatggccatggtcaaaac |
8788982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 8789230 - 8789175
Alignment:
| Q |
5 |
agagctctagaatcaaggtttgcatcaagtcttccgagttctgtgatcagagaaat |
60 |
Q |
| |
|
||||||||| ||||| |||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
8789230 |
agagctctaacatcaatgtttgcatcaggtctatcgagttctgtgatcagagaaat |
8789175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University