View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3683_high_3 (Length: 701)

Name: NF3683_high_3
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3683_high_3
NF3683_high_3
[»] chr7 (11 HSPs)
chr7 (377-687)||(5375911-5376228)
chr7 (12-247)||(5376279-5376514)
chr7 (420-575)||(5368451-5368607)
chr7 (286-421)||(5368284-5368419)
chr7 (110-265)||(5368062-5368214)
chr7 (96-225)||(36853046-36853175)
chr7 (143-242)||(35169949-35170048)
chr7 (488-540)||(5403591-5403643)
chr7 (93-207)||(24547662-24547777)
chr7 (169-218)||(46214467-46214516)
chr7 (18-70)||(5367415-5367467)
[»] chr8 (14 HSPs)
chr8 (146-242)||(26819258-26819354)
chr8 (163-220)||(3017471-3017528)
chr8 (169-234)||(26762851-26762916)
chr8 (164-213)||(39560339-39560388)
chr8 (167-219)||(10744257-10744309)
chr8 (164-242)||(30011758-30011836)
chr8 (164-235)||(16527482-16527553)
chr8 (97-192)||(34338653-34338748)
chr8 (164-209)||(2309154-2309200)
chr8 (167-221)||(43059451-43059505)
chr8 (164-213)||(29705899-29705948)
chr8 (105-161)||(4670602-4670657)
chr8 (150-219)||(16168305-16168376)
chr8 (164-228)||(31188874-31188938)
[»] chr6 (6 HSPs)
chr6 (148-228)||(733580-733662)
chr6 (163-220)||(18361298-18361355)
chr6 (169-214)||(31650307-31650352)
chr6 (142-221)||(8782972-8783051)
chr6 (165-228)||(25094709-25094772)
chr6 (165-234)||(7952307-7952376)
[»] chr5 (8 HSPs)
chr5 (135-214)||(36261960-36262039)
chr5 (97-216)||(35035571-35035691)
chr5 (167-218)||(18871012-18871063)
chr5 (164-214)||(36639769-36639819)
chr5 (148-214)||(16230759-16230827)
chr5 (171-235)||(16215390-16215454)
chr5 (164-215)||(16962198-16962248)
chr5 (151-241)||(7705307-7705397)
[»] chr2 (5 HSPs)
chr2 (99-234)||(10231799-10231935)
chr2 (122-219)||(9529506-9529600)
chr2 (165-219)||(5129658-5129712)
chr2 (184-221)||(35991377-35991414)
chr2 (165-217)||(44250661-44250713)
[»] chr1 (7 HSPs)
chr1 (150-242)||(14303921-14304015)
chr1 (99-181)||(16979581-16979664)
chr1 (164-242)||(24126880-24126957)
chr1 (171-205)||(32408099-32408133)
chr1 (490-535)||(12766353-12766398)
chr1 (181-234)||(15867621-15867674)
chr1 (93-218)||(34796781-34796907)
[»] chr4 (3 HSPs)
chr4 (165-234)||(1132154-1132223)
chr4 (164-234)||(10997329-10997399)
chr4 (174-227)||(18966004-18966057)
[»] chr3 (5 HSPs)
chr3 (163-221)||(48183708-48183765)
chr3 (148-210)||(48553069-48553131)
chr3 (164-213)||(38900006-38900055)
chr3 (169-214)||(43220827-43220872)
chr3 (150-219)||(44009252-44009323)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 377 - 687
Target Start/End: Complemental strand, 5376228 - 5375911
Alignment:
Q  377 catgcatatattgccaccaccaagactgacaatagtcgttttatccagaggaggaa---attgggctcc-ttcttttttgaggttccttgtaaactagaa 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||     |   |||||||||| ||||||||||||||||||||||||||||||    
T  5376228 catgcatatattgccaccaccaagactgacaatagtcgttttatcc-gagtcttcatctattgggctcccttcttttttgaggttccttgtaaactagaa 5376130  T
Q  473 gacatgggattcatcgagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatttgaaagattggcattaaacaacgtaaagaatg 572  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5376129 gacatgggattactcgagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatttgaaagattggcattaaacaacgcaaagaatg 5376030  T
Q  573 catgcttgagcatactcagtattg----taaacaaagtgattgatatcgtgtccagaaggtgatatgagatatgagcatgtgggttcggatacaaacgca 668  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5376029 catgcttgagcatactcagtattgtaattaaacaaagtgattgatatcgtgtccagaaggtgatatgagatatgagcatgtgggttcggatacaaatgca 5375930  T
Q  669 aatttcatgcatttatata 687  Q
    |||||||||||||||||||    
T  5375929 aatttcatgcatttatata 5375911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 5376514 - 5376279
Alignment:
Q  12 ataggttttgaaatacaagtgagtgagcagtctcatgtcgactaagagtaaactaaatgaatgattaaaagacgtgttttaaataatgagtttaattttg 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5376514 ataggttttgaaatacaagtgagtgaacagtctcatgtcgactaagaataaactaaatgaatgattaaaagacgtgttttaaataatgagtttaattttg 5376415  T
Q  112 atatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatg 211  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5376414 atatattgtcagtgtaaaaaggctttacaacattagaaaatcacaaccaaccatgtgcgactttagaagtagttatgattacagtcaaacgtttttaatg 5376315  T
Q  212 atctgacgatcatgattcattgaaagtgtaatacac 247  Q
    ||||||||||||||||||||||||||||||||||||    
T  5376314 atctgacgatcatgattcattgaaagtgtaatacac 5376279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 420 - 575
Target Start/End: Original strand, 5368451 - 5368607
Alignment:
Q  420 tccagaggaggaaattgggctcc-ttcttttttgaggttccttgtaaactagaagacatgggattcatcgagtcattttcttgtctaagaacaagaatat 518  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||  || ||||||||||||||||||||||||||||||    
T  5368451 tccagaggaggaaattgagctcccttcttttttgaggttccttgtaaattagaggacatgggattactcaagtcattttcttgtctaagaacaagaatat 5368550  T
Q  519 tagttattggtcctgcaacatttgaaagattggcattaaacaacgtaaagaatgcat 575  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5368551 tagttattggtcctgcaacatttgaaagattggcattaaacaacgtaaagaatgcat 5368607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 286 - 421
Target Start/End: Original strand, 5368284 - 5368419
Alignment:
Q  286 aaatattaaagacacctaatcatgaatagagacaaacctgaagttctttactgtaactagaaatgagttgagaactaaggtatgaaacatccatgcatat 385  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  5368284 aaatattaaaggaacctaatcatcaatagagacaaacctgaagttctttactgtaactagaaatcacttgagaactaaggtatgaaacatccatgcatat 5368383  T
Q  386 attgccaccaccaagactgacaatagtcgttttatc 421  Q
    ||||||||||||||||||||||||||||||||||||    
T  5368384 attgccaccaccaagactgacaatagtcgttttatc 5368419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 110 - 265
Target Start/End: Original strand, 5368062 - 5368214
Alignment:
Q  110 tgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaa 209  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||  |||||||||||||| ||   |||||||| |||||||||||||    
T  5368062 tgatatattgtcagtgtaaaaaggctttacagcatcagaaaatcacaaccaatcattcgtgactttagaagttgt---gattacagccaaacgtttttaa 5368158  T
Q  210 tgatctgacgatcatgattcattgaaagtgtaatacaccgacaatttatctgaatt 265  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  5368159 tgatctgatgatcatgattcattgaacgtgtaatacactgacaatttatatgaatt 5368214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 36853046 - 36853175
Alignment:
Q  96 aatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccat--gtgtgactttagaagtagttatgattac 193  Q
    ||||||||||||||||||| | |||| || |||||||  ||||||  ||||| ||||||||||||| |||  |||||||||||||||||||||||||||     
T  36853046 aatgagtttaattttgatacactgtcggtataaaaag--tttacattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagttatgattat 36853143  T
Q  194 agtcaaacgtttttaatgatctgacgatcatg 225  Q
    | |||||  |||||| ||||||||| ||||||    
T  36853144 aatcaaatatttttattgatctgactatcatg 36853175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 35170048 - 35169949
Alignment:
Q  143 gtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 242  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||| | |||||| |||| ||||| |  ||| ||||| |||||||    
T  35170048 gtcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctaacgattacaattgattgacagtgtaa 35169949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 5403643 - 5403591
Alignment:
Q  488 gagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatt 540  Q
    |||||| |||||||||||||||| | || |||||||||| |||||||||||||    
T  5403643 gagtcactttcttgtctaagaacgaaaacattagttattcgtcctgcaacatt 5403591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 24547662 - 24547777
Alignment:
Q  93 aataatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgt--gtgactttagaagtagttatgat 190  Q
    ||||| |||||| | ||||||| |  ||||||||||||||  ||||||  ||||  ||||||||||||| ||| |  |||| ||||||||||||||||||    
T  24547662 aataaagagtttgaatttgatacaccgtcagtgtaaaaagt-tttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgat 24547760  T
Q  191 tacagtcaaacgttttt 207  Q
    |  |||||||| |||||    
T  24547761 tgaagtcaaacattttt 24547777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 46214516 - 46214467
Alignment:
Q  169 tgactttagaagtagttatgattacagtcaaacgtttttaatgatctgac 218  Q
    |||||||||||||  | ||||||| |||||||||||||| ||||||||||    
T  46214516 tgactttagaagtcataatgattaaagtcaaacgttttttatgatctgac 46214467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 5367415 - 5367467
Alignment:
Q  18 tttgaaatacaagtgagtgagcagtctcatgtcgactaagagtaaactaaatg 70  Q
    ||||||||||||||||||  | ||||  ||||||||||||| |||||||||||    
T  5367415 tttgaaatacaagtgagtaggtagtccaatgtcgactaagaataaactaaatg 5367467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 26819354 - 26819258
Alignment:
Q  146 agcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 242  Q
    |||||||||||||||| |||||||||||||||||||||||  ||| | |||||||| ||||||||||||| |||||  | ||| |||||| ||||||    
T  26819354 agcaaatcacaaccaatcatgtgtgactttagaagtagttgcgataaaagtcaaacatttttaatgatctaacgattgtaattgattgaatgtgtaa 26819258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 3017471 - 3017528
Alignment:
Q  163 catgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacga 220  Q
    |||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||    
T  3017471 catgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 3017528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 26762916 - 26762851
Alignment:
Q  169 tgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 234  Q
    |||||||||||||| ||||||||| ||||||||||||||| |||||||| ||| |||||| |||||    
T  26762916 tgactttagaagtaattatgattaaagtcaaacgtttttactgatctgaggattatgattgattga 26762851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 39560339 - 39560388
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgat 213  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||||    
T  39560339 atgtatgactttagaagtagttatgattaaagtcaaacatttttaatgat 39560388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 10744309 - 10744257
Alignment:
Q  167 tgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 219  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| |||||    
T  10744309 tgtgactttagaagcagttataattaaagtcaaacgtttttaatgatgtgacg 10744257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 30011758 - 30011836
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 242  Q
    |||||||| |||||||||||||||||||  |||||||| ||||||||| | |||| |  |||||| ||||| |||||||    
T  30011758 atgtgtgattttagaagtagttatgattgaagtcaaacatttttaatgttatgacaagtatgattgattgacagtgtaa 30011836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 16527482 - 16527553
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaa 235  Q
    |||| |||||||||||||||||| || || | ||||||||| |||||||||||| ||| | |||| ||||||    
T  16527482 atgtatgactttagaagtagttacgactaaactcaaacgttcttaatgatctgatgattacgattgattgaa 16527553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 34338653 - 34338748
Alignment:
Q  97 atgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgatta 192  Q
    ||||||| |||||||||| | |||| |||||||||    ||||| |||||   ||| ||||| || |||||||||||||| |||||||||||||||    
T  34338653 atgagttcaattttgatacactgtccgtgtaaaaaaatgttacatcgtcaaggaatgacaacaaatcatgtgtgactttaaaagtagttatgatta 34338748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 2309200 - 2309154
Alignment:
Q  164 atgtgtgactttagaagtagttat-gattacagtcaaacgtttttaa 209  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||    
T  2309200 atgtgtgactttagaagtagttatcgattacagccaaatgtttttaa 2309154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 43059505 - 43059451
Alignment:
Q  167 tgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgat 221  Q
    ||||||||||||||||||||| |||| |||||||  ||||| ||||| |||||||    
T  43059505 tgtgactttagaagtagttattattaaagtcaaagttttttgatgatttgacgat 43059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 29705948 - 29705899
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgat 213  Q
    |||| ||||||||||||| |||||||| | |||||||||||| |||||||    
T  29705948 atgtatgactttagaagtggttatgataaaagtcaaacgtttataatgat 29705899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 4670602 - 4670657
Alignment:
Q  105 aattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaa 161  Q
    ||||||||||||| ||||||||||||| | ||||||  |||| ||||||||||||||    
T  4670602 aattttgatatatcgtcagtgtaaaaa-gttttacatggtcaacaaatcacaaccaa 4670657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 16168376 - 16168305
Alignment:
Q  150 aatcacaaccaaccatgtgtg--actttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 219  Q
    |||||||||||| ||||||||  ||||||  | |||| ||||||| ||||||| |||||||||||| |||||    
T  16168376 aatcacaaccaatcatgtgtgtcactttaatattagtgatgattaaagtcaaatgtttttaatgatttgacg 16168305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 31188938 - 31188874
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgatt 228  Q
    |||||||||||| |||||| ||||||||  ||| |||| ||| |||||||||||| || ||||||    
T  31188938 atgtgtgactttcgaagtaattatgattgaagttaaacatttgtaatgatctgacaattatgatt 31188874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 733662 - 733580
Alignment:
Q  148 caaatcacaaccaaccat--gtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgatt 228  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||| ||||  |||||||||||||||| ||| | ||||||    
T  733662 caaatcacaaccaaccatacgtgtgactttagaagtagttacgattaaagtcggacgtttttaatgatctaacggttatgatt 733580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 18361298 - 18361355
Alignment:
Q  163 catgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacga 220  Q
    |||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||    
T  18361298 catgtgtgactttcaaagtagttatgattaaagttaaacgtttttaatgatctgacga 18361355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 31650352 - 31650307
Alignment:
Q  169 tgactttagaagtagttatgattacagtcaaacgtttttaatgatc 214  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||    
T  31650352 tgactttagaagtagttatgattaaagtcaaacatttttaatgatc 31650307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 8783051 - 8782972
Alignment:
Q  142 cgtcagcaaatcacaaccaaccatgtgt--gactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgat 221  Q
    ||||| |||||||||||||| ||| | |  |||||| |||||||||||||||| |||||||  |||||||||||| ||||||    
T  8783051 cgtcaacaaatcacaaccaatcatatatatgacttttgaagtagttatgattaaagtcaaa--tttttaatgatcggacgat 8782972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 25094709 - 25094772
Alignment:
Q  165 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgatt 228  Q
    |||||||||||| ||||| ||||||||| |||||||| | |||||||||  |||||| ||||||    
T  25094709 tgtgtgactttaaaagtacttatgattaaagtcaaacatgtttaatgattagacgattatgatt 25094772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 7952376 - 7952307
Alignment:
Q  165 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 234  Q
    |||||| |||||||||| |||||||| | ||| ||| ||||||||||||| |||| | |||||| |||||    
T  7952376 tgtgtggctttagaagttgttatgataaaagtgaaatgtttttaatgatccgacggttatgattgattga 7952307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 36261960 - 36262039
Alignment:
Q  135 tttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatc 214  Q
    |||||| ||||||||||||| || |||  || |||||||||||||||||||||||||| || |||| |||||||||||||    
T  36261960 tttacaccgtcagcaaatcagaaacaattatatgtgactttagaagtagttatgattaaagccaaatgtttttaatgatc 36262039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 35035691 - 35035571
Alignment:
Q  97 atgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccat--gtgtgactttagaagtagttatgattaca 194  Q
    |||||||||||||||||| | |||| || ||||||   ||||||  ||||| ||||||||||||| |||  |||||| |||||||||||||||||||| |    
T  35035691 atgagtttaattttgatacactgtcggtataaaaaat-tttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgattaaa 35035593  T
Q  195 gtcaaacgtttttaatgatctg 216  Q
     |||||  |||||| |||||||    
T  35035592 atcaaatatttttattgatctg 35035571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 18871063 - 18871012
Alignment:
Q  167 tgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgac 218  Q
    ||||||||||||||||||||| ||||  ||||||||| ||||||||||||||    
T  18871063 tgtgactttagaagtagttatcattaaggtcaaacgtgtttaatgatctgac 18871012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 36639769 - 36639819
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatc 214  Q
    ||||||||||||||||||||||||||||| | | ||||||| |||||||||    
T  36639769 atgtgtgactttagaagtagttatgattaaattgaaacgttcttaatgatc 36639819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 16230759 - 16230827
Alignment:
Q  148 caaatcacaaccaaccatgtgt--gactttagaagtagttatgattacagtcaaacgtttttaatgatc 214  Q
    |||||||||||||| ||| |||  || |||||||||||||||||||| |||||||| |||| |||||||    
T  16230759 caaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaacattttaaatgatc 16230827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 16215454 - 16215390
Alignment:
Q  171 actttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaa 235  Q
    |||||||||||||||| ||||  |||||||| |||||||| ||||| | || |||||||||||||    
T  16215454 actttagaagtagttacgattcaagtcaaacatttttaataatctgtcaattatgattcattgaa 16215390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 16962248 - 16962198
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatct 215  Q
    ||||| |||||||||| |||||||||||| ||||||||| ||||||||||||    
T  16962248 atgtgcgactttagaaatagttatgattaaagtcaaacg-ttttaatgatct 16962198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 7705397 - 7705307
Alignment:
Q  151 atcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgta 241  Q
    |||||||| || |||||||||||||| |||| |||||||| | ||||||| ||||  ||||| |||||  | |||||| ||||| ||||||    
T  7705397 atcacaacaaatcatgtgtgactttaaaagtggttatgataaaagtcaaatgtttccaatgacctgactgttatgattgattgacagtgta 7705307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 10231799 - 10231935
Alignment:
Q  99 gagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaacc--atgtgtgactttagaagtagttatgattacagt 196  Q
    ||||||||||||||||||||||||||||||||| | ||||||  |||  || || |||| ||| |  |||||||| ||||||| |||||||||| | |||    
T  10231799 gagtttaattttgatatattgtcagtgtaaaaa-gttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaagt 10231897  T
Q  197 caaacgtttttaatgatctgacgatcatgattcattga 234  Q
    |||| | |||||||||||||| |||  ||||| |||||    
T  10231898 caaatgattttaatgatctgatgattgtgattgattga 10231935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 9529506 - 9529600
Alignment:
Q  122 agtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccat--gtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 219  Q
    |||||||||||  |||||| | |||||||||||||||||| |||  ||||||||||| ||||| |||| |    |||||||||||||||||||| |||||    
T  9529506 agtgtaaaaagt-tttacatcatcagcaaatcacaaccaatcatatgtgtgactttaaaagtaattataa----agtcaaacgtttttaatgatgtgacg 9529600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 5129712 - 5129658
Alignment:
Q  165 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 219  Q
    |||||||||||||||||| |||||||||  |||||| |||||| ||||| |||||    
T  5129712 tgtgtgactttagaagtatttatgattaaggtcaaatgttttttatgatatgacg 5129658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 35991377 - 35991414
Alignment:
Q  184 ttatgattacagtcaaacgtttttaatgatctgacgat 221  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  35991377 ttattattagagtcaaacgtttttaatgatctgacgat 35991414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 44250661 - 44250713
Alignment:
Q  165 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctga 217  Q
    ||||||||||||||| |||||||||||| |  ||||| |||||||||| ||||    
T  44250661 tgtgtgactttagaaatagttatgattaaaagcaaacatttttaatgagctga 44250713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 14304015 - 14303921
Alignment:
Q  150 aatcacaaccaaccatgtg--tgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 242  Q
    |||||||||||| ||| ||  |||||||| ||||||||||||||| |||||||| ||| ||| |||||||||||  ||||| ||||| |||||||    
T  14304015 aatcacaaccaatcatatgagtgactttaaaagtagttatgattaaagtcaaacttttataacgatctgacgatgctgattgattgacagtgtaa 14303921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 16979581 - 16979664
Alignment:
Q  99 gagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaac--catgtgtgactttagaagt 181  Q
    |||||||||||||||| | |||||||||||||| | ||||||  |||| |||||||||||||||   || |||||||||||||||    
T  16979581 gagtttaattttgatacactgtcagtgtaaaaa-gatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaagt 16979664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 24126957 - 24126880
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 242  Q
    |||| ||| |||||||||||||||| ||| |||||||  ||||||||||||||| ||| | |||| ||||| |||||||    
T  24126957 atgtttgattttagaagtagttatgtttaaagtcaaa-ttttttaatgatctgatgattaagattgattgatagtgtaa 24126880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 32408133 - 32408099
Alignment:
Q  171 actttagaagtagttatgattacagtcaaacgttt 205  Q
    |||||||||||||||||||||| ||||||||||||    
T  32408133 actttagaagtagttatgattaaagtcaaacgttt 32408099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 12766398 - 12766353
Alignment:
Q  490 gtcattttcttgtctaagaacaagaatattagttattggtcctgca 535  Q
    |||| |||||||||||| ||||| |||||||||||| |||||||||    
T  12766398 gtcaatttcttgtctaacaacaataatattagttataggtcctgca 12766353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 15867621 - 15867674
Alignment:
Q  181 tagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 234  Q
    |||||||||||| ||||||||  |||||||||| ||||||| |||||| |||||    
T  15867621 tagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattga 15867674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 34796781 - 34796907
Alignment:
Q  93 aataatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaacc--atgtgtgactttagaagtagttatgat 190  Q
    ||||||||| |||||||| ||| | ||||| || ||||||  ||||||| ||||||| || ||||||||||  ||| || || |||||| ||||||||||    
T  34796781 aataatgagcttaattttcatacactgtcactgcaaaaagt-tttacaatgtcagcatatgacaaccaaccatatgagttacgttagaattagttatgat 34796879  T
Q  191 tacagtcaaacgtttttaatgatctgac 218  Q
     | | |||||| | ||||||||| ||||    
T  34796880 aaaattcaaacatgtttaatgatatgac 34796907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 1132223 - 1132154
Alignment:
Q  165 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 234  Q
    |||||| |||||||| |||||||||| | ||||||| |||| ||||||||||||| | |||||| |||||    
T  1132223 tgtgtgtctttagaattagttatgataaaagtcaaatgtttctaatgatctgacggttatgattgattga 1132154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 10997329 - 10997399
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 234  Q
    |||||| ||||||||| ||| |||||||| ||||  |||||||||||||| | ||||| |||||| |||||    
T  10997329 atgtgtaactttagaaatagatatgattaaagtcttacgtttttaatgatataacgattatgattgattga 10997399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 18966004 - 18966057
Alignment:
Q  174 ttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgat 227  Q
    |||||| |||||| ||||| |||||||| ||||||||||| ||||||| |||||    
T  18966004 ttagaattagttacgattaaagtcaaacatttttaatgatatgacgattatgat 18966057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 48183765 - 48183708
Alignment:
Q  163 catgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgat 221  Q
    |||||||||||||||||||||| ||| | ||  |||||||||||| |||||||||||||    
T  48183765 catgtgtgactttagaagtagtcatgttgactttcaaacgttttt-atgatctgacgat 48183708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 48553069 - 48553131
Alignment:
Q  148 caaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaat 210  Q
    |||||||||| ||| ||| |||||||||||||||  ||||||||| | ||||| |||||||||    
T  48553069 caaatcacaatcaatcatatgtgactttagaagtttttatgattaaattcaaatgtttttaat 48553131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 38900055 - 38900006
Alignment:
Q  164 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgat 213  Q
    ||||||||||||| ||||||||| |||   ||||||||||||||||||||    
T  38900055 atgtgtgactttaaaagtagttaggatacaagtcaaacgtttttaatgat 38900006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 43220827 - 43220872
Alignment:
Q  169 tgactttagaagtagttatgattacagtcaaacgtttttaatgatc 214  Q
    |||||||||||||  ||||||||| ||||||||||||||| |||||    
T  43220827 tgactttagaagtgattatgattaaagtcaaacgtttttattgatc 43220872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 44009252 - 44009323
Alignment:
Q  150 aatcacaaccaaccatgtgtg--actttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 219  Q
    |||||||||||| ||||||||  ||||||  | |||| ||||||| ||||||| |||||||||||| |||||    
T  44009252 aatcacaaccaatcatgtgtgtcactttaatattagtgatgattaaagtcaaatgtttttaatgatttgacg 44009323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University