View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3683_high_6 (Length: 595)

Name: NF3683_high_6
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3683_high_6
NF3683_high_6
[»] chr7 (5 HSPs)
chr7 (4-508)||(36732435-36732939)
chr7 (506-552)||(36731609-36731655)
chr7 (99-146)||(6205407-6205454)
chr7 (99-146)||(6792779-6792826)
chr7 (157-224)||(30335740-30335807)
[»] chr5 (1 HSPs)
chr5 (20-508)||(41550089-41550578)
[»] chr1 (12 HSPs)
chr1 (56-474)||(37752240-37752660)
chr1 (73-379)||(5321383-5321690)
chr1 (55-381)||(30901679-30902016)
chr1 (72-235)||(9886377-9886540)
chr1 (101-146)||(19552755-19552800)
chr1 (99-146)||(7797868-7797915)
chr1 (99-146)||(8055142-8055189)
chr1 (99-146)||(28705316-28705363)
chr1 (99-146)||(46019186-46019233)
chr1 (99-146)||(46077336-46077383)
chr1 (99-146)||(49572822-49572869)
chr1 (99-146)||(33695937-33695984)
[»] chr8 (4 HSPs)
chr8 (20-474)||(29515112-29515562)
chr8 (103-146)||(11596891-11596934)
chr8 (99-146)||(24785153-24785200)
chr8 (99-146)||(35195792-35195839)
[»] chr6 (4 HSPs)
chr6 (179-287)||(6262016-6262124)
chr6 (20-143)||(6262130-6262254)
chr6 (294-411)||(6260936-6261053)
chr6 (20-140)||(20679185-20679305)
[»] scaffold0012 (1 HSPs)
scaffold0012 (99-146)||(109091-109138)
[»] chr4 (1 HSPs)
chr4 (99-146)||(54908301-54908348)


Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 4 - 508
Target Start/End: Complemental strand, 36732939 - 36732435
Alignment:
Q  4 tattgtcttatcgctgagtatgatgaacctcaaagtgtcaactacggttaatagatttttgatacgttgaatcaacgaagtggtcgttcaactagtcttg 103  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  36732939 tattgtcttatcgctaagtatgatgaacctcaaagtgtcaactacgtctaatagatttttgatacgctgaatcaacgaagtggtcgtccaactagtcttg 36732840  T
Q  104 caattatttgtaaccatgtcaataaacaattttgaatcacttttcagacggatatgtgaaactccatcacgtcatgctagctccaaacccaaatacacac 203  Q
    ||||||||||||||||||| |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36732839 caattatttgtaaccatgttaataaacaattttgaatcactttctagacgaatatgtgaaactccatcacgtcatgctagctccaaacccaaatacacac 36732740  T
Q  204 cccacatttttgcatgcagagcatcacaaacttcaattttgcgcacaaattatttgagccatttgtcattagtatcccgaagaagaccgccacaccccac 303  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  36732739 cccacatttctgcatgcagagcatcacaaacttcaatcttgcgcacaaattatttgagccatttatcattagtatcctgaagaagaccgcaacaccccac 36732640  T
Q  304 acgatttccattctctttaaatgccgtatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaagga 403  Q
    || |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  36732639 acaatttccattctctttaaatgccctattacaattgagtttaacccatccttcatgagaacgcttccaaccaatgaaagttgttttagtatgtcaagga 36732540  T
Q  404 ccattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagcagatctttaaaaattattctcaaaatttg 503  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36732539 tcattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagtcggattagcagatctttaaaaattattctcaaaatttg 36732440  T
Q  504 tttta 508  Q
    |||||    
T  36732439 tttta 36732435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 36731655 - 36731609
Alignment:
Q  506 ttaagtatgctgagctagacgtggagatataacttaagtacttaaat 552  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  36731655 ttaagtatgatgagctagacgtagagatataacttaagtacttaaat 36731609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 6205454 - 6205407
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  6205454 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 6205407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 6792779 - 6792826
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  6792779 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 6792826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 30335807 - 30335740
Alignment:
Q  157 atgtgaaactccatcacgtcatgctagctccaaacccaaatacacaccccacatttttgcatgcagag 224  Q
    |||||||| || ||||||||| |||||||| ||||| ||||||| |||| | ||||||||||| ||||    
T  30335807 atgtgaaattctatcacgtcaagctagctctaaaccgaaatacaaacccaaaatttttgcatgaagag 30335740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 508
Target Start/End: Original strand, 41550089 - 41550578
Alignment:
Q  20 agtatgatgaacctcaaagtgtcaactacggtt-aatagatttttgatacgttgaatcaacgaagtggtcgttcaactagtcttgcaattatttgtaacc 118  Q
    ||||||||||||||||| ||| |||||||| |  || |||||| |||||||  | |||||||||| |||||| | | ||||| |||| || |||||||||    
T  41550089 agtatgatgaacctcaacgtgccaactacgatccaaaagatttctgatacgccgcatcaacgaaggggtcgtcccattagtcctgcagttgtttgtaacc 41550188  T
Q  119 atgtcaataaacaattttgaatcacttttcagacggatatgtgaaactccatcacgtcatgctagctccaaacccaaatacacaccccacatttttgcat 218  Q
    |||||||||| |||||||||||| | || || || || ||||||||||||||| || || ||||||||||| || ||||| | ||||||||||| |||||    
T  41550189 atgtcaataagcaattttgaatcgccttccacacagagatgtgaaactccatcccgccaagctagctccaaccctaaatataaaccccacatttctgcat 41550288  T
Q  219 gcagagcatcacaaacttcaattttgcgcacaaattatttgagccatttgtcattagtatcccgaagaagaccgccacaccccacacgatttccattctc 318  Q
    |||||||||| |||||| |||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  41550289 gcagagcatcgcaaactccaattttgcgcacaaatcctttgagccacttgtcattagtgtcccgaagaagaccgccacaccccgcacgatttccattctc 41550388  T
Q  319 tttaaatgccgtatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaaggaccattatgaagataa 418  Q
    |||  |||||  |||||||||||||||||||||||| || || | | ||||||||||||||||| |||||| |||||| | |||||| | | |||||| |    
T  41550389 tttgcatgccccatcacaattgagtttaacccatccctcctgaggatgcttccaaccaatgaaaattgtttcagtgtgccgaggaccttgaagaagatta 41550488  T
Q  419 ttggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagcagatctttaaaaattattctcaaaatttgtttta 508  Q
    |||||||| |||||||| |||||||||||||| || |||||||||||||||||||| | ||||| |||||||| ||||||| ||||||||    
T  41550489 ttggtgcaatcttcgatagtgctagagaaggcctgaatgacactagttggattagctggtctttgaaaattatcctcaaaaattgtttta 41550578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 56 - 474
Target Start/End: Complemental strand, 37752660 - 37752240
Alignment:
Q  56 agatttttgatacgttgaatcaacgaagtggtcgttcaactagtcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttttcagacgga 155  Q
    |||||| |||||||   |||||| |||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||    
T  37752660 agatttctgatacgccaaatcaatgaaggggtcgtcccattagtcttgcaattatttgtaaccatgtcaataaacaattttgaatcactctccatacaga 37752561  T
Q  156 tatgtgaaactccatcacgtcatgctagctccaaacccaaatacacaccccacatttttgcatgcagagcatcacaaacttcaattttgcgcacaaatta 255  Q
     |||||||| ||||||||| || |||||||| ||||| ||||||| ||||||||||| |||||| ||||||||||||||  |||| ||||||||||||      
T  37752560 gatgtgaaattccatcacgccaagctagctctaaaccaaaatacaaaccccacatttctgcatgtagagcatcacaaacaccaatcttgcgcacaaatct 37752461  T
Q  256 tttgagccatttgtcattagtatcccgaagaagaccgccacaccccacacgatttccattctctttaaatgccgtatcacaattgagtttaacccatccg 355  Q
    ||||| |||| |  |||||||||||| |||||||| |||||| ||||||||||||||||||| |||  | | |  |||| |||||||||||| ||||||     
T  37752460 tttgaaccatctaccattagtatcccaaagaagactgccacaacccacacgatttccattctatttgcacgtcccatcataattgagtttaa-ccatccc 37752362  T
Q  356 tcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaaggaccatt---atgaagataattggtgcagtcttcgatggtgctagagaaggcat 452  Q
    ||||| | || ||||||||||||||||   |||| |||||||  |||||||||   | |||||| ||||||||| |||||||| |||||||||||    |    
T  37752361 tcatgaggacacttccaaccaatgaaaaccgtttcagtgtgttgaggaccattctgaagaagattattggtgcaatcttcgatagtgctagagaacattt 37752262  T
Q  453 ggatgacactagttggattagc 474  Q
    | ||||||||||||||||||||    
T  37752261 gaatgacactagttggattagc 37752240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 73 - 379
Target Start/End: Complemental strand, 5321690 - 5321383
Alignment:
Q  73 aatcaacgaagtggtcgttcaactagtcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttttcagacggatatgtgaaactccatca 172  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||| ||||||||| ||||||| || |  || |||||||| |||||||    
T  5321690 aatcaacgaaggggtcgttccattagtcttgcaattatttgtaaccatatcaataagcaattttgagtcactttccacatagagatgtgaaattccatca 5321591  T
Q  173 cgtcatgctagctccaaacccaaatacacaccccacatttttgcatgcagagcatcacaaacttcaattttgcgcacaaattatttgagccatttgtcat 272  Q
    | ||| |||||||||||| || |||||| ||| || |||| |||||| ||||||||||||||| |||| ||||| ||||||  |||||||||| ||||||    
T  5321590 cttcaagctagctccaaa-cctaatacaaacctcaaatttctgcatgaagagcatcacaaactccaatcttgcgtacaaatcctttgagccatctgtcat 5321492  T
Q  273 tagtatcccgaagaagaccgccacaccccacac-gatttcc--attctctttaaatgccgtatcacaattgagtttaacccatccgtcatgtgaacgctt 369  Q
     ||| || ||||||||||| ||||| ||| ||| | |||||  |||||||||  | |||  ||||||| |||||||||| ||||  ||||| |||| |||    
T  5321491 cagtgtcgcgaagaagaccaccacaacccgcacaggtttccaaattctctttgcacgcc-catcacaactgagtttaacgcatctctcatgagaacactt 5321393  T
Q  370 ccaaccaatg 379  Q
    ||||||||||    
T  5321392 ccaaccaatg 5321383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 55 - 381
Target Start/End: Complemental strand, 30902016 - 30901679
Alignment:
Q  55 tagatttttgatacgttgaatcaacgaagtggtcgttcaactagtcttgcaattatttgtaaccatgtcaataaa--caattttgaatcacttttcagac 152  Q
    ||||||| |||||||  |||||||||||  |||||| |   |||||||||||||||||||||||||||||||| |  ||||||| |||||| || || ||    
T  30902016 tagatttctgatacgccgaatcaacgaatgggtcgtcccgttagtcttgcaattatttgtaaccatgtcaatataagcaatttttaatcaccttccacac 30901917  T
Q  153 ggatatgtgaaactccatcacgtcatgctagctccaaacccaaatacacaccccacatt--tttgcatgcagagcatcacaaacttcaattttgcgcaca 250  Q
     || |||||||||||||||||| || |||||||||||||||| ||| | ||||||  ||  |||| |||||||||||||||| || |||| |||| ||||    
T  30901916 agagatgtgaaactccatcacgccaggctagctccaaacccagatataaaccccaatttaatttgtatgcagagcatcacaatctccaatcttgcacaca 30901817  T
Q  251 aattatttgagccatttgtcattagtatcccgaagaagaccgcc--acac-----cccacacgatttccattctctttaaatgccgtatcacaattgagt 343  Q
    |||| |||||| |||||| ||||| |||||||||||||||||||   |||     ||| || ||||||||||||||||  |||||  ||||||||| |||    
T  30901816 aattctttgagtcatttgccattactatcccgaagaagaccgccgtccaccgcttcccgcatgatttccattctctttgcatgccccatcacaatttagt 30901717  T
Q  344 ttaacccatccgtcatgtgaacgcttccaaccaatgaa 381  Q
    ||||| ||||| ||||| | | |||||| |||||||||    
T  30901716 ttaactcatccctcatgaggatgcttccgaccaatgaa 30901679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 9886377 - 9886540
Alignment:
Q  72 gaatcaacgaagtggtcgttcaactagtcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttttcagacggatatgtgaaactccatc 171  Q
    ||||||||| || |||||| | | ||||||||||||||| | ||||||||||||| |||||||    |||||||| || ||  | |||||||| ||||||    
T  9886377 gaatcaacggaggggtcgtcccattagtcttgcaattatgtttaaccatgtcaatcaacaattcatgatcactttccacacaaagatgtgaaattccatc 9886476  T
Q  172 acgtcatgctagctccaaacccaaatacacaccccacatttttgcatgcagagcatcacaaact 235  Q
    | | || |||||||| ||||| ||||||| ||| |||||||  |||| || | |||||||||||    
T  9886477 atgacaagctagctctaaaccgaaatacagacctcacatttcagcatacaaaacatcacaaact 9886540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 19552755 - 19552800
Alignment:
Q  101 ttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||    
T  19552755 ttgcaattatttgtaaccatgtcaataactaattttgaatcacttt 19552800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 7797915 - 7797868
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  7797915 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 7797868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 8055142 - 8055189
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  8055142 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 8055189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 28705363 - 28705316
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  28705363 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 28705316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 46019186 - 46019233
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  46019186 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 46019233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 46077383 - 46077336
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | |||| ||||||||||||||||||||||||    
T  46077383 tcttgcaattatttgttatcatgacaataaacaattttgaatcacttt 46077336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 49572822 - 49572869
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  49572822 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 49572869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 33695937 - 33695984
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||| ||||| ||||||||||||| || ||||||||||||||    
T  33695937 tcttgcaattttttgttaccatgtcaataagcatttttgaatcacttt 33695984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 6e-60; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 20 - 474
Target Start/End: Original strand, 29515112 - 29515562
Alignment:
Q  20 agtatgatgaacctcaaagtgtcaactacggtt-aatagatttttgatacgttgaatcaacgaagtggtcgttcaactagtcttgcaattatttgtaacc 118  Q
    |||||||||||  |||| ||| ||||||||||  || |||||| |||||||| | |||||||||| | |||| | | ||||| |||| |||||| ||||     
T  29515112 agtatgatgaatttcaatgtgccaactacggtccaaaagatttctgatacgtcgcatcaacgaagggatcgtcccattagtcctgcagttatttctaact 29515211  T
Q  119 atgtcaataaacaattttgaatcacttttcagacggatatgtgaaactccatcacgtcatgctagctccaaacccaaatacacaccccacatttttgcat 218  Q
    |||||||||| |||||||||||| | || || ||  | ||||||||||||||  ||||| ||||||||||| | | ||||   ||||||||||| |||||    
T  29515212 atgtcaataagcaattttgaatcgccttccacacatagatgtgaaactccattccgtcaagctagctccaacctcgaata---accccacatttctgcat 29515308  T
Q  219 gcagagcatcacaaacttcaattttgcgcacaaattatttgagccatttgtcattagtatcccgaagaagaccgccacaccccacacgatttccattctc 318  Q
    |||||||||| |||||| |||| |||| |||||||  ||||||| ||||| ||||||| ||  | |||||||| || ||||||||| |||||||||||||    
T  29515309 gcagagcatcgcaaactccaatcttgcacacaaatcctttgagcaatttgccattagtgtctaggagaagaccaccgcaccccacatgatttccattctc 29515408  T
Q  319 tttaaatgccgtatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaaggaccattatgaagataa 418  Q
    |||  | |||  ||||||||||||||||| |||||| || || | | ||||||| ||| ||||| ||| || ||  |||| |||||| | | |||||  |    
T  29515409 tttgcacgcc-catcacaattgagtttaatccatccttcctgaggatgcttccagccagtgaaaattggttcagcatgtcgaggacc-tgaagaagagta 29515506  T
Q  419 ttggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagc 474  Q
    |||||| |||||||||  || ||||||||||| |||||||||||||||||||||||    
T  29515507 ttggtgtagtcttcgaaagttctagagaaggcttggatgacactagttggattagc 29515562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 11596891 - 11596934
Alignment:
Q  103 gcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    ||||||||||||| |||||||||||| |||||||||||||||||    
T  11596891 gcaattatttgtatccatgtcaataagcaattttgaatcacttt 11596934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 24785200 - 24785153
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  24785200 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 24785153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 35195792 - 35195839
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  35195792 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 35195839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 6262124 - 6262016
Alignment:
Q  179 gctagctccaaacccaaatacacaccccacatttttgcatgcagagcatcacaaacttcaattttgcgcacaaattatttgagccatttgtcattagtat 278  Q
    |||||||||||||||||||||  || |||| ||| ||||||||||||||||| |||| |||| ||||||||||||   ||||| ||||||||||||||||    
T  6262124 gctagctccaaacccaaataccaacaccacgtttctgcatgcagagcatcacgaactccaatcttgcgcacaaatcccttgagtcatttgtcattagtat 6262025  T
Q  279 cccgaagaa 287  Q
    | |||||||    
T  6262024 ctcgaagaa 6262016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 6262254 - 6262130
Alignment:
Q  20 agtatgatgaacctcaaagtgtcaactacggtt-aatagatttttgatacgttgaatcaacgaagtggtcgttcaactagtcttgcaattatttgtaacc 118  Q
    |||||||| |||||||| ||| ||||||||||  ||||||||| ||||| || |||||||| ||| |||||| | | |||||||||||||||||| ||||    
T  6262254 agtatgataaacctcaacgtgccaactacggtcgaatagatttctgatatgtcgaatcaaccaaggggtcgtaccattagtcttgcaattatttgaaacc 6262155  T
Q  119 atgtcaataaacaattttgaatcac 143  Q
    |||||||||| || |||||||||||    
T  6262154 atgtcaataagcagttttgaatcac 6262130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 411
Target Start/End: Complemental strand, 6261053 - 6260936
Alignment:
Q  294 cacaccccacacgatttccattctctttaaatgccgtatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagt 393  Q
    ||||||||||| | | ||||||||||||  | |||  ||||||||||||||||| |||||  ||||| | ||||||||||||||| ||| |||||| | |    
T  6261053 cacaccccacatggtctccattctctttgcacgccccatcacaattgagtttaatccatctctcatgaggacgcttccaaccaataaaaattgtttcaat 6260954  T
Q  394 gtgtcaaggaccattatg 411  Q
    ||||| | ||||| ||||    
T  6260953 gtgtcgatgaccaatatg 6260936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 20679185 - 20679305
Alignment:
Q  20 agtatgatgaacctcaaagtgtcaactacggt-taatagatttttgatacgttgaatcaacgaagtggtcgttcaactagtcttgcaattatttgtaacc 118  Q
    ||||| ||||||||||| ||| |||||||| | || ||||||  |||||||  |||||||| ||| | |||| |   || ||||||||||||||||||||    
T  20679185 agtataatgaacctcaacgtgccaactacgatctagtagattcctgatacgccgaatcaacaaagggatcgtcccgttaatcttgcaattatttgtaacc 20679284  T
Q  119 atgtcaataaacaattttgaat 140  Q
    |||| ||| | |||||||||||    
T  20679285 atgttaat-agcaattttgaat 20679305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 109091 - 109138
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  109091 tcttgcaattatttgttatcatgtcaataagcaattttgaatcacttt 109138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 54908301 - 54908348
Alignment:
Q  99 tcttgcaattatttgtaaccatgtcaataaacaattttgaatcacttt 146  Q
    |||||||||||||||| | ||| ||||||| |||||||||||||||||    
T  54908301 tcttgcaattatttgttatcatatcaataagcaattttgaatcacttt 54908348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University