View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3683_high_9 (Length: 550)

Name: NF3683_high_9
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3683_high_9
NF3683_high_9
[»] chr1 (3 HSPs)
chr1 (1-187)||(5569556-5569743)
chr1 (281-473)||(5569270-5569462)
chr1 (289-337)||(9266106-9266154)
[»] chr8 (2 HSPs)
chr8 (7-108)||(2631261-2631365)
chr8 (300-360)||(2631743-2631803)
[»] scaffold0236 (2 HSPs)
scaffold0236 (14-111)||(6015-6114)
scaffold0236 (112-145)||(6231-6264)
[»] scaffold0050 (1 HSPs)
scaffold0050 (289-360)||(12866-12937)
[»] chr7 (2 HSPs)
chr7 (298-339)||(2040108-2040149)
chr7 (295-339)||(3399581-3399625)
[»] chr2 (1 HSPs)
chr2 (289-339)||(3914275-3914325)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 9e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 5569743 - 5569556
Alignment:
Q  1 agccgtcgtatcgaacccgttctgggggg-actcctctccaactgctcaatgaattttttattggaatgtgtgaggtattggtaactcggattctagagt 99  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  5569743 agccgtcgtatcgaacccgttctgggggggactcctctccaactgctcaatgaattttttattggaatgtgtgaggtattagtaactcggattctagaat 5569644  T
Q  100 tgctttaaataagactgaattactgcctgttttacactttgatttccacatagacagatatggtctgtctacctacaaattcccttaa 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5569643 tgctttaaataagactgaattactgcctgttttacactttgatttccacagagacagatatggtctgtctacctacaaattcccttaa 5569556  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 281 - 473
Target Start/End: Complemental strand, 5569462 - 5569270
Alignment:
Q  281 aaaaattattgagattgacggcataggatgaaggttcatcgggttgtcaacctagttggatcgccgttggttcctcttgacgctagtcctctcgactaac 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||  || ||    
T  5569462 aaaaattattgagattgacggcataggatgaaggttcatcgggttatcaacctagttggaacgccgttggttcctcttgacgctagtcatctctcctgac 5569363  T
Q  381 tatccaaaaaatatatttgtcaatagagaggtggtgatttttaacgagtaaacaaccacttctgtctggaagaatgaaatgcggtggcacaat 473  Q
    |||||||||||||||||| |||  ||| | ||| |||||||||| |||||||||||||||| ||||| ||||||||| |||||||| ||||||    
T  5569362 tatccaaaaaatatatttttcaggagacatgtgatgatttttaaggagtaaacaaccacttttgtctcgaagaatgacatgcggtgtcacaat 5569270  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 9266154 - 9266106
Alignment:
Q  289 ttgagattgacggcataggatgaaggttcatcgggttgtcaacctagtt 337  Q
    ||||| ||| |||||||||||| |||||| |||||||||| ||||||||    
T  9266154 ttgagtttggcggcataggatggaggttcttcgggttgtctacctagtt 9266106  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 2631261 - 2631365
Alignment:
Q  7 cgtatcgaacccgttctggg-gggactcctctccaactgctcaatgaat--tttttattggaatgtgtgaggtattggtaactcggattctagagttgct 103  Q
    |||||| |||||||||| || ||||||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2631261 cgtatctaacccgttctaggtgggactcctctccaactgcccaatgaatattttttattggaatgtgtggggtattggtaactcggattctagagttgct 2631360  T
Q  104 ttaaa 108  Q
    |||||    
T  2631361 ttaaa 2631365  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 2631743 - 2631803
Alignment:
Q  300 ggcataggatgaaggttcatcgggttgtcaacctagttggatcgccgttggttcctcttga 360  Q
    |||||||||||||| ||||||||| || ||||||||| |||  | ||||| ||||||||||    
T  2631743 ggcataggatgaagattcatcggggtgccaacctagtcggaatgtcgttgcttcctcttga 2631803  T

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Target: scaffold0236 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 6015 - 6114
Alignment:
Q  14 aacccgttctggggggactcctctccaactgctcaatgaat--tttttattggaatgtgtgaggtattggtaactcggattctagagttgctttaaataa 111  Q
    |||||||| | |||||||||| || |||||||||||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6015 aacccgttatagggggactccacttcaactgctcaataaatattttttattggaatgtgcgaggtattggtaactcggattctagagttgctttaaataa 6114  T

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Target: scaffold0236; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 6231 - 6264
Alignment:
Q  112 gactgaattactgcctgttttacactttgatttc 145  Q
    ||||||||||||||||||||||||||||||||||    
T  6231 gactgaattactgcctgttttacactttgatttc 6264  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 12937 - 12866
Alignment:
Q  289 ttgagattgacggcataggatgaaggttcatcgggttgtcaacctagttggatcgccgttggttcctcttga 360  Q
    ||||||||||||||||| |||| |||||| ||||| |||||||||||||| |  | ||||| ||||||||||    
T  12937 ttgagattgacggcatatgatggaggttcttcgggatgtcaacctagttgaaatgtcgttgcttcctcttga 12866  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 2040149 - 2040108
Alignment:
Q  298 acggcataggatgaaggttcatcgggttgtcaacctagttgg 339  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  2040149 acggcataggatgaaggttcatcgggatgccaacctagttgg 2040108  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 3399625 - 3399581
Alignment:
Q  295 ttgacggcataggatgaaggttcatcgggttgtcaacctagttgg 339  Q
    ||||||||||||||||||||||  ||||| || ||||||||||||    
T  3399625 ttgacggcataggatgaaggtttctcggggtgccaacctagttgg 3399581  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 3914325 - 3914275
Alignment:
Q  289 ttgagattgacggcataggatgaaggttcatcgggttgtcaacctagttgg 339  Q
    ||||||||||||| |||||||||  |||||||||| || ||||||||||||    
T  3914325 ttgagattgacggtataggatgagagttcatcggggtgccaacctagttgg 3914275  T

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