View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_1 (Length: 771)
Name: NF3683_low_1
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_1 |
 | |
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| [»] scaffold0066 (1 HSPs) |
| | |
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| [»] scaffold0478 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 18 - 767
Target Start/End: Original strand, 43909754 - 43910512
Alignment:
| Q |
18 |
caactctatctttccaagttctttttgtttgaaaacttgatatttgactcgaattttttcaagttatgttatgggatcatcctttttgtcccgaatcatg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43909754 |
caactctatctttccaagttctttttgtttgaaaacttgatatttgactcgaattttttcaagttatgttatgggatcctcctttttgtcccgaatcatg |
43909853 |
T |
|
| Q |
118 |
ttatgtaatttatacctcttaaaatgagatgagatttgaactttgaattcttacatacattttaagagtttagtctcttatgctagacccaacctcatca |
217 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
43909854 |
ttatgtaattcgtacctcttaaaatgagatgagatttgaactttgaattcttacatacattttaagagtttagtctcttctgctagacccgacctcatca |
43909953 |
T |
|
| Q |
218 |
tttatacgaagtattttacttcacttacgaagaaaggggtaacttgattaatactttattttactctgattcctcagttagattaaatttttacaaaaac |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43909954 |
tttatacgaagtattttacttcacttacgaagaaagggataacttgattaatactttattttactctggttcctcagttagattaaatttttacaaaaac |
43910053 |
T |
|
| Q |
318 |
aaataaaatttattgagctggacaaccacaaagatgataattagctaagagatcctctacattgcttaaaattcaataagaacattaatttgttaattag |
417 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43910054 |
aaacaaaatttattgagttggacaaccacaaagatgataattagctaagaggtcctctacattgcttaaaattcaataagaacattaatttgttaattag |
43910153 |
T |
|
| Q |
418 |
ttactaggttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaaatttaatagtaatattaatccttaatttgtaaga |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43910154 |
ttactaggttaaatatatttggagtccctacaaaatcataagtttttaagtttaattcctataaaattttaatagtaatattaatccttaatttgtaaga |
43910253 |
T |
|
| Q |
518 |
ataatctctattttaaaaactgttt-nnnnnnnntgtcttaaaaataattcata-------aaggagtaaaagtgaata-nnnnnnnngcaggactaaac |
608 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
43910254 |
ataatctctattttaaaaactgtttaaagaaaaatgtcttaaaaataattcatataaaatgaaggagtaaaagtgaatatttttttttgcaggactaaac |
43910353 |
T |
|
| Q |
609 |
tttgaaagtgtataattttgtatataacccttaattatttaaattttggtatatgcaaaatggaacattcatctccgtcgccggaaaaagaagacggcgg |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43910354 |
tttgaaagtgtataattttgtatataacccttaattatttaaattttggtatatgcaaaatggaacattcatctccgtcgccggaaaaagaagacggcgg |
43910453 |
T |
|
| Q |
709 |
cgatgaggaagtgatgagcgaagtccacctcggttgcccacccagattctctgctcctc |
767 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
43910454 |
cgatgaggaagtgatgagcgaagtccacctcggttgcccacccagattctctggtcctc |
43910512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 424 - 483
Target Start/End: Complemental strand, 10516741 - 10516682
Alignment:
| Q |
424 |
ggttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaa |
483 |
Q |
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|||||||||| ||| |||||||||||||||||||| ||||||||||| | ||||||||| |
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|
| T |
10516741 |
ggttaaatatgtttttagtccctacaaaatcataagtttttaaatttagtccctataaaa |
10516682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 505
Target Start/End: Original strand, 12611793 - 12611872
Alignment:
| Q |
426 |
ttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaaatttaatagtaatattaatcct |
505 |
Q |
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|||||||| ||| ||||||||||||||||| | ||||||||||||| ||| ||||| |||||| ||||| ||| |||| |
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| T |
12611793 |
ttaaatatgtttttagtccctacaaaatcatgaatttttaaatttaatccctctaaaattttaatggtaattttagtcct |
12611872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 505
Target Start/End: Complemental strand, 25043005 - 25042925
Alignment:
| Q |
424 |
ggttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaaatttaatagtaatattaatcct |
505 |
Q |
| |
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|||||||||| ||| ||||||||||||||||| || ||| |||||| | |||||||||| |||||| ||||| ||| |||| |
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| T |
25043005 |
ggttaaatatgtttttagtccctacaaaatcatgagttttcaaattt-agtcctataaaattttaatggtaattttagtcct |
25042925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 14922 - 14984
Alignment:
| Q |
426 |
ttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaaattta |
488 |
Q |
| |
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|||||||| ||| |||||||||||||| |||| |||||||||||| |||||| ||||||||| |
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|
| T |
14922 |
ttaaatatgtttatagtccctacaaaattataaacttttaaatttagttcctaaaaaaattta |
14984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 505
Target Start/End: Original strand, 12596850 - 12596931
Alignment:
| Q |
424 |
ggttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaaatttaatagtaatattaatcct |
505 |
Q |
| |
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|||||||||| ||| |||| ||||||||||||||| |||||| |||| | ||||||||| |||||| ||||| ||| |||| |
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| T |
12596850 |
ggttaaatatgtttttagtctctacaaaatcataagtttttaagtttagtccctataaaattttaatggtaattttagtcct |
12596931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 505
Target Start/End: Complemental strand, 27567838 - 27567757
Alignment:
| Q |
424 |
ggttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaaatttaatagtaatattaatcct |
505 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||| || |||| | ||||||||| |||||| ||||| ||| |||| |
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| T |
27567838 |
ggttaaatatatttttagtccctacaaaatcatgagttttaaagtttattccctataaaattttaatggtaattttagtcct |
27567757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 505
Target Start/End: Original strand, 34471235 - 34471300
Alignment:
| Q |
440 |
agtccctacaaaatcataagcttttaaatttaattcctataaaaatttaatagtaatattaatcct |
505 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| | ||||||||| |||||| ||||| ||| |||| |
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|
| T |
34471235 |
agtccctacaaaatcacaagcttttaagtttagtccctataaaattttaatggtaattttagtcct |
34471300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 484
Target Start/End: Original strand, 2298900 - 2298961
Alignment:
| Q |
423 |
aggttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaaa |
484 |
Q |
| |
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||||||||||| ||| |||||||||||||| | |||||||||| |||||| |||||||||| |
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| T |
2298900 |
aggttaaatatgtttatagtccctacaaaattacaagcttttaagtttaatccctataaaaa |
2298961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 538
Target Start/End: Original strand, 38377820 - 38377916
Alignment:
| Q |
440 |
agtccctacaaaatcataagcttttaaatttaattcctataaaaatttaatagtaatattaatccttaatttgtaagaataatctctattttaaaaact |
538 |
Q |
| |
|
||||| |||||||||| || |||||| |||| | ||||||||| |||||| ||||| ||| || |||||| |||||||| || |||||||||||||| |
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| T |
38377820 |
agtccttacaaaatcacaaatttttaagtttagtccctataaaattttaatggtaattttagtc--taatttataagaatagtccctattttaaaaact |
38377916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 40390885 - 40390952
Alignment:
| Q |
423 |
aggttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaaatttaat |
490 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| || ||| || |||| ||||||||||| |||||| |
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|
| T |
40390885 |
aggttaaatatgtttttagtccctacaaaatcatgagttttcaagtttagttcctataaaattttaat |
40390952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0478 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 505
Target Start/End: Original strand, 3218 - 3299
Alignment:
| Q |
424 |
ggttaaatatatttggagtccctacaaaatcataagcttttaaatttaattcctataaaaatttaatagtaatattaatcct |
505 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| || |||||| ||||| ||||| ||| |||||| ||||| ||| |||| |
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| T |
3218 |
ggttaaatatgtttttagtccctacaaaatcatgagtttttaagcttaatccctatgaaattttaatggtaattttagtcct |
3299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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