View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3683_low_12 (Length: 495)
Name: NF3683_low_12
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_12 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 79 - 495
Target Start/End: Complemental strand, 33751324 - 33750912
Alignment:
| Q |
79 |
ttatattcttatccttattaaaaaacaatgtactcattgaagctgaatatataaccctttaagctaaaaagacaaaatcagtgaacagaactagtattta |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33751324 |
ttatattcttatccttattaaaaaacaatgcactcattgaagctgaatatataaccctttaagctaaaaagacaaaatcagtgaacagaactagtattta |
33751225 |
T |
|
| Q |
179 |
tactataatataattcaacaaagccacacattaagtagaatattttagaaagcagattacattaaaatcacgatttgcacttgcaggtatatatcaaggc |
278 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33751224 |
tactataatataattcaataaagccacacattaagtacaatattttagaaagcagattacattaaaatcacgatttgcagttgcaggtatatatcaaggc |
33751125 |
T |
|
| Q |
279 |
aattttgttcgtgnnnnnnngtagttgaagcaagaaagacactagctagctgcacattgcacagcaaaattctacatagcagattcttctgcaaaaacaa |
378 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33751124 |
aattttgttcgtgaaaaaaagtagttgaagcaagaaagaca----ctagctgcacattgcacagcaaaattctacatagcagattcttctgcaaaaacaa |
33751029 |
T |
|
| Q |
379 |
aaattgaaatcacgatttgcacttgcagctggcaaggcaacttcctcctccgacaaactctagtggaagaaagcttatgcacattgttgcaaagcgaagc |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33751028 |
aaattgaaatcacgatttgcacttgcagctggcatggtaacttcctcctccgaaaaaatctagtggaagaaagattatgcacattgttgcaaagcgaagc |
33750929 |
T |
|
| Q |
479 |
taatcaataacttaacc |
495 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
33750928 |
taatcaataccttaacc |
33750912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 33719578 - 33719518
Alignment:
| Q |
346 |
aattctacatagcagattcttctgcaaaaacaaaaattgaaatcacgatttgcacttgcag |
406 |
Q |
| |
|
||||||||| ||| ||||||||| ||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
33719578 |
aattctacaaagcggattcttcttcaaaatcaaacattgaaatcactatttgcacttgcag |
33719518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 32576023 - 32575995
Alignment:
| Q |
240 |
ttaaaatcacgatttgcacttgcaggtat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32576023 |
ttaaaatcacgatttgcacttgcaggtat |
32575995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University