View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_15 (Length: 438)
Name: NF3683_low_15
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 38710544 - 38710144
Alignment:
| Q |
18 |
aactggacatcccatcgatcgacatcttcttcggcctctagatccaaaccactatttgcatcaccaaattccaaagtcagctgcttgcgtgataaagaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38710544 |
aactggacatcccatcgatcgacatcttcttcggcctctagatccaaaccactatttgcatcaccaaattccaaagtcagctgcttgcgtgataa-gaaa |
38710446 |
T |
|
| Q |
118 |
ataataaagtgcttttggtccattaacttaatttcagataacaatttggtatttcatcnnnnnnnnncatgttattttgatccaaggtttcaaatgtttc |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38710445 |
ataataaagtgattttggtccattaacttaatttcagataacaatttggtatttcatctttttttttcatgttattttgatccaaggtttcaaatgtttc |
38710346 |
T |
|
| Q |
218 |
ctctcggcctttcccattttttcaagttgtgggaattcataaaaaagggtcaccacattccatatggcaaacatttgacaatctatcaaataattactca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38710345 |
ctctcggcctttcccattttttcaagttgtgggaattcataaaaaagggtcaccacattccatatggcaaacgtttgacaatctatcaaataattactca |
38710246 |
T |
|
| Q |
318 |
atgagattgtcgttactttcctcgttgtcgccatagcatgagatttcttaactggacgtaactactagttttatcgtgaaccagttttatggtgagcctg |
417 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38710245 |
atgagatcgtcgttactttcctcgttgtcgccatagcatgagatttcttaactggacgtaactactagttttatcgtgaaccagttttatggcgagcctg |
38710146 |
T |
|
| Q |
418 |
ta |
419 |
Q |
| |
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|| |
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| T |
38710145 |
ta |
38710144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 684965 - 685003
Alignment:
| Q |
129 |
cttttggtccattaacttaatttcagataacaatttggt |
167 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |
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| T |
684965 |
cttttagtcccttaacttaatttcagataacaatttggt |
685003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 11362082 - 11362044
Alignment:
| Q |
129 |
cttttggtccattaacttaatttcagataacaatttggt |
167 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |
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| T |
11362082 |
cttttcgtcccttaacttaatttcagataacaatttggt |
11362044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 25061313 - 25061351
Alignment:
| Q |
129 |
cttttggtccattaacttaatttcagataacaatttggt |
167 |
Q |
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|
|||||||||| ||||||||||||||| |||||||||||| |
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| T |
25061313 |
cttttggtcccttaacttaatttcaggtaacaatttggt |
25061351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 32809421 - 32809383
Alignment:
| Q |
129 |
cttttggtccattaacttaatttcagataacaatttggt |
167 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
32809421 |
cttttggtccattaacttaatttcaggtaacagtttggt |
32809383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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