View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_19 (Length: 389)
Name: NF3683_low_19
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 38982263 - 38982638
Alignment:
| Q |
1 |
tagcattatccatagtaaaatcttggtccaagaaaaggggaggaggtgattacgagttaaagtcatg-tatgtacatgtgatatagagcatctttattac |
99 |
Q |
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| T |
38982263 |
tagcattatccatagtaaaatcttggtccaagaaaaggggaggaggtgattacgagttaaagtcatggtatgtacatgtgatatagagcatctttattac |
38982362 |
T |
|
| Q |
100 |
aaattataaaacaaatgattttgacattaaatagagataaattctaagacatcgatgcagacatactcgggagggagggtatggttctctctcctctccc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
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| T |
38982363 |
aaattataaaacaaatgattttgacattaaatagagataaattctaagacatcgatgcagagaaactcggga----gggtatggttctctctcctctccc |
38982458 |
T |
|
| Q |
200 |
taaccgtttttctccggtgaatttatctaccttcggtgcagctccggtggccgttttttcaccgttttattcgattatcttcgtcgtttcacatgcgttt |
299 |
Q |
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| T |
38982459 |
taaccgtttttctccggtgaatttatctaccttcggtgcagctccggtggccgttttttcaccgttttattcgattatcttcgtcgtttcacatgcgttt |
38982558 |
T |
|
| Q |
300 |
cttgcctccatcatctgcatcgcttctctccgcgggctttttgcgtctttgtgtttggcggtggtggttttagctctctg |
379 |
Q |
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| T |
38982559 |
cttgcctccatcatctgcatcgcttctctccgcgggctttttgcctcttagtgtttggcggtggtggttttagctctctg |
38982638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 38985445 - 38985331
Alignment:
| Q |
19 |
aatcttggtccaagaaaaggggaggaggtgattacgagttaaagtcatgtatgtacatgtgatatagagcatctttattacaaatt-ataaaacaaatga |
117 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
38985445 |
aatcttgatccaagaaaaggggaggaggtgaatacgagttaaagtcatgtatgtacatgtgatatagagcatgtttactacaaattaataaaacaaatga |
38985346 |
T |
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| Q |
118 |
ttttgacattaaata |
132 |
Q |
| |
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|||| |||||||||| |
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| T |
38985345 |
ttttcacattaaata |
38985331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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