View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_20 (Length: 380)
Name: NF3683_low_20
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 35365159 - 35364815
Alignment:
| Q |
11 |
agcagagagattaagtaacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcacatgggaccatggagaaaacataaa |
110 |
Q |
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| T |
35365159 |
agcagagagattaagtaacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcatatgggaccatggagaaaacataaa |
35365060 |
T |
|
| Q |
111 |
tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35365059 |
tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagc |
35364960 |
T |
|
| Q |
211 |
caaaggcatcaatgttaaccattgatttattagagaatattcctaatatgcatactactgttaaagttgtgtaaattgctattattggtcaaggtggata |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364959 |
caaaggcatcaatgttaaccattgatttattagagaatattccgaatatgcatactactgttaaagttgtgtaaattgctattattggtcaaggtggata |
35364860 |
T |
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| Q |
311 |
cttag--nnnnnnnnngaaagaaaggtggaaacttagttaattgg |
353 |
Q |
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| T |
35364859 |
cttagtttttttttctgaaagaaaggtggaaacttagttaattgg |
35364815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 35373275 - 35373023
Alignment:
| Q |
11 |
agcagagagattaagtaacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcacatgggaccatggagaaaacataaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373275 |
agcagagagattaagtaacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcacatgggaccatggagaaaacataaa |
35373176 |
T |
|
| Q |
111 |
tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373175 |
tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagc |
35373076 |
T |
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| Q |
211 |
caaaggcatcaatgttaaccattgatttattagagaatattcctaatatgcat |
263 |
Q |
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||||||||||||||||||| | ||||| ||||||| ||||| |||||||| |
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| T |
35373075 |
caaaggcatcaatgttaacagtggatttgctagagaagtttcctgatatgcat |
35373023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 3776214 - 3776391
Alignment:
| Q |
67 |
tgaaggaaaacaaaatgcacatgggaccatggagaaaacataaatacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcact |
166 |
Q |
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||||||| || |||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||| | |||||||||||||||||| | | || |
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| T |
3776214 |
tgaaggataaaaaaatgcacatggggccatggaggaagcataggtacatgcaagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctct |
3776313 |
T |
|
| Q |
167 |
ttcattgggatattctgagaggaatattaatccaaagcagaagccaaaggcatcaatgttaaccattgatttattagagaa |
247 |
Q |
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| T |
3776314 |
tccaatgggaaattctgagagg-ataataa--caaagccaaaatcaaaggcatctatgttgactattgatttattagagaa |
3776391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 3807935 - 3808013
Alignment:
| Q |
82 |
tgcacatgggaccatggagaaaacataaatacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaa |
160 |
Q |
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|||| ||||| |||||||| | ||||| |||||| ||||||||||||||||||||| | ||||| || |||||||||| |
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| T |
3807935 |
tgcatatggggccatggaggaggcataagtacatggaagctaaatggttaggtccatgtgaaaggtacccttcaacaaa |
3808013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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