View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_21 (Length: 375)
Name: NF3683_low_21
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 16050037 - 16050353
Alignment:
| Q |
18 |
aatctagcatgtgttagttacatttttggccaaaatacgaaaaataaataaataa-ttgggatggaaggttggtaggtgtctttaagggggtttgaaaat |
116 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16050037 |
aatctagcatgtgttagttacatttttgaccagaatacgaaaaataaataaataacttgggatagaaggttggtaggtgtctttaagggggtttgaaaat |
16050136 |
T |
|
| Q |
117 |
ccttctgtttgggttctcaaacaatggatgctctttcttcatttttctcttttgagtttttgcaaaaaattgagattgtacttgtatattcatactatta |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16050137 |
ccttctgttttggttctcaaacaatggatgctctttcttcatttttctcttttgagtttttgcaaaaaattgagattgtacttgtatattcatacta-ta |
16050235 |
T |
|
| Q |
217 |
tattggatttttaatcttcaatcattattccaattaatttttcagaggcacttaaagctttaagggttaattgttctccattaaattactgtgagaagag |
316 |
Q |
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|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
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| T |
16050236 |
tattggatttttaatcttcaatcattgttccaattaa-ttatcagaggcacttaaagctataagggtctattgttctccattaaattacagtgagaagag |
16050334 |
T |
|
| Q |
317 |
taacaaaatacagttgcta |
335 |
Q |
| |
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|||||||| ||||||||| |
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| T |
16050335 |
caacaaaatgcagttgcta |
16050353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 30594118 - 30594433
Alignment:
| Q |
22 |
tagcatgtgttagttacatttttggccaaaatacgaaaaataaataaataattg-ggatggaaggttggtaggtgtctttaagggggtttgaaaatcctt |
120 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30594118 |
tagcatgagttagttacattttttgccaaaatacgaaaaataaataaataactgaggatggaaggttggtaggtgtctttaagggggtttgaaaatcctt |
30594217 |
T |
|
| Q |
121 |
ctgtttgggttctcaaacaatggatgctctttcttcatttttctcttttgagtttttgcaaaaaattgagattgtacttgtatattcatac---tattat |
217 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
30594218 |
ttatttgggttctcaaacaatggatgctctttcttcatttttctcttttgagtttttgcaaaaaattgagattgtact--tatattcatactattattat |
30594315 |
T |
|
| Q |
218 |
attggatttttaatcttcaatcattattccaattaatttttcagaggcacttaaagctttaagggttaattgttctccattaaattactgtgagaagagt |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
30594316 |
attggatttttaatcttcaatcattgttccaattaattttcgagaggcgcttaaagctttaagggttaattgttctctattatattatagtgagaagagc |
30594415 |
T |
|
| Q |
318 |
aacaaaatacagttgcta |
335 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
30594416 |
aacaaaatgcagttgcta |
30594433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 183 - 335
Target Start/End: Complemental strand, 35240954 - 35240802
Alignment:
| Q |
183 |
aaattgagattgtacttgtatattcatactattatattggatttttaatcttcaatcattattccaattaatttttcagaggcacttaaagctttaaggg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35240954 |
aaattgagattgtacttgtatattcatactattatattggatttttaatcttcaatcattattccaattaattttccagaggcacttaaagctttaaggg |
35240855 |
T |
|
| Q |
283 |
ttaattgttctccattaaattactgtgagaagagtaacaaaatacagttgcta |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
35240854 |
ttaattgttctccattaaattactgtgagaagagcaacaaaatgcagttgcta |
35240802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 35241071 - 35240952
Alignment:
| Q |
18 |
aatctagcatgtgttagttacatttttggccaaaatacgaaaaataaataaataattgggatggaaggttggtaggtgtctttaagggggtttgaaaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35241071 |
aatctagcatgtgttagttacatttttggccagaatacgaaaaataaataaataattgggatggaaggttggtaggtgtctttaagggggtttgaaaatc |
35240972 |
T |
|
| Q |
118 |
cttctgtttgggttctcaaa |
137 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
35240971 |
cttctgtttgggttctcaaa |
35240952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 32966568 - 32966656
Alignment:
| Q |
212 |
tattatattggatttttaatcttcaatcattattccaattaatttttcagaggcacttaaagctttaagggttaattgttctccattaaa |
301 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| |||| |||||||||| |||||||| ||| ||||||||||||||||||| |||||| |
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| T |
32966568 |
tattattttggatttttaattttcaatcattgttcc-attaattttttggaggcactaaaaagcttaagggttaattgttctcaattaaa |
32966656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 32966399 - 32966561
Alignment:
| Q |
26 |
atgtgttagttaca--tttttggccaaaatacgaaaaataaataaataattggga-tggaaggttggtaggtgtctttaagggggtttgaaa-------a |
115 |
Q |
| |
|
|||||||||||||| ||||| | || ||||| | ||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||| | |
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| T |
32966399 |
atgtgttagttacagattttttgtcagaatacaataaataaataaataattgggggtggaaggttgggtggtg-cttgaagggggtttgaactttgaaga |
32966497 |
T |
|
| Q |
116 |
tccttctgtttgggttctcaaacaatggatgctctttcttcatttttctcttttgagtttttgca |
180 |
Q |
| |
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|||||||||||||||| ||||||||||| || ||||||||||||| ||| | ||||||||||| |
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| T |
32966498 |
tccttctgtttgggttaccaaacaatggagtctttttcttcattttt-tctctcgagtttttgca |
32966561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 53731815 - 53731924
Alignment:
| Q |
212 |
tattatattggatttttaatcttcaatcattattccaattaatttttcagaggcact-taaagctttaagggttaa-----ttgttctccattaaattac |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||| | ||| ||||||||| |||||||| |||||| ||||||||||| ||||||||| ||||||||| |
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|
| T |
53731815 |
tattattttggatttttaatcttcaatcaatgttctcgttaattttttggaggcactataaagc-ttaagggttaatttagttgttctccgttaaattac |
53731913 |
T |
|
| Q |
306 |
tgtgagaagag |
316 |
Q |
| |
|
|||||||||| |
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|
| T |
53731914 |
agtgagaagag |
53731924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 30202966 - 30202928
Alignment:
| Q |
284 |
taattgttctccattaaattactgtgagaagagtaacaa |
322 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
30202966 |
taattgttctccattaaattacagtgagaagagcaacaa |
30202928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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