View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_22 (Length: 368)
Name: NF3683_low_22
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 45173930 - 45174275
Alignment:
| Q |
19 |
aaaccgccacaataggtgctaacagtgcctgtatccatgacataagtggaaccaacgtaaaatagtggcaatttgagccacggcatttaatggcacctaa |
118 |
Q |
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| T |
45173930 |
aaaccgccacaataggtgctgacagtgcctgtatccatgacataagtggaaccagcgtaaaatagtggcaatttgagccacgacattttatggcacctaa |
45174029 |
T |
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| Q |
119 |
aattgccgcaactctccttattttgtacggtgtttcaccaaatttacattttatccaaacattatattgtctaacaagtgtgagtcgtaagtccgacata |
218 |
Q |
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| T |
45174030 |
aattgccgcaactctccttgttttgtacagtgtttcaccaaactaacattttatccaaacattatattgtctaacaagtgtgaatcataagtcagacata |
45174129 |
T |
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| Q |
219 |
catattgcttgaaaaaagtgacggttgagcagcatatagatcgnnnnnnnttcgtatcttagatgctttaaagctttagataaagatgttgtatctctaa |
318 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
45174130 |
tatcttgcttgaaaaaagtgacggttgagcaacatatagatcgaaaaaaatttgtatcttagatg-tttaaagctttagataaagatgttgtatctctca |
45174228 |
T |
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| Q |
319 |
tgaccc---agtacattcaaccgtagaaaaactaaggtgatgatgtc |
362 |
Q |
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|||||| |||||||||||| ||||||||| ||||| |||||||| |
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| T |
45174229 |
tgacccagtagtacattcaactatagaaaaaccaaggtaatgatgtc |
45174275 |
T |
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