View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_24 (Length: 352)
Name: NF3683_low_24
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 24211423 - 24211101
Alignment:
| Q |
16 |
aaaccaaacgataatgaggtctctgttgattataaagagaactttattaaacacaacgttactaaacttgttgataatgaagttgatgcaacaaaatact |
115 |
Q |
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| T |
24211423 |
aaaccaaacgataatgaggtctctgttgattataaagagaactttattaagcacaacgttactaaacttgttgataatgaagttgatgcaacaaaatact |
24211324 |
T |
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| Q |
116 |
ttnnnnnnn-tgtgaaatataaagttagagatgatttgaataattgggtccatcaaagcatcaatgaccaaattaacattaaatattgacaaattcgatc |
214 |
Q |
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| T |
24211323 |
tcaaaaaaaatgtgaaatataaagttagagatgatttgaataattgggtccatcaaagcatcaatgaccaaattaacattaaatattgacaaattcgatc |
24211224 |
T |
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| Q |
215 |
atggtgttggacgaagaccacaaaagttaatcttggggtgtgaaatgggtggtatgtaccatggaaccaagaagaaattgaagcgagaagacaataatgg |
314 |
Q |
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| T |
24211223 |
atggtgttggacaaagaccacaaaagttaatcttggggtgtgaaatgggtggtatgtaccatggaaccaagaagaaattgaagcgagaagacaataatgg |
24211124 |
T |
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| Q |
315 |
gttaaggaaatgtgaatgttcat |
337 |
Q |
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| T |
24211123 |
gttaagaaaatgtgaatgttcat |
24211101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 41 - 305
Target Start/End: Complemental strand, 24206098 - 24205830
Alignment:
| Q |
41 |
ttgattataaagagaactttattaaacacaacgttactaaacttgttgataatgaagttgatgcaacaaaatac-tttnnnnnnntgtgaaatataaagt |
139 |
Q |
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| T |
24206098 |
ttgattataaagagaacattattaagcacattgtttctaaacttgtttatgatgaagttgatacgaggaaacacgttttgacaaatttgagatataaagt |
24205999 |
T |
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| Q |
140 |
tagagatgatttgaataattgggtccatca--aagcatcaatgaccaaattaacattaaatattgacaaattcgatcatggtgttggacgaagaccacaa |
237 |
Q |
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| T |
24205998 |
tagaggtgatttgaataactgggctcgtcagcaagcatcaatgatcagatttatcttaattattgacaaatcctatcatggtggtggacgaagaccacat |
24205899 |
T |
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| Q |
238 |
aagttaatctt-ggggtgtgaaatgggtggtatgtaccatggaaccaagaagaaattgaagcgagaaga |
305 |
Q |
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| T |
24205898 |
aagttaatcttgggggtatgaaatgggtggtttgtaccatggaaccaagaagaaattgatgtgagaaga |
24205830 |
T |
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