View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_32 (Length: 288)
Name: NF3683_low_32
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 7356929 - 7357077
Alignment:
| Q |
11 |
cacagacgaaaaacaatacaatgcagaattcaaaccttaaaccctacgcaaccaccaccctcaccagccttaaccaaagaacctcacaaattcttcgacc |
110 |
Q |
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| T |
7356929 |
cacaaacgaaaaacaatacaatgcagaattcaaaccttaaaccctacgcaaccaccaccctcaccagccttaaccaaagaacctcacaaattcttcgacc |
7357028 |
T |
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| Q |
111 |
aagtaatcatcaccgttcgtggaggagacggtggtcacggagcaatact |
159 |
Q |
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| T |
7357029 |
aagtaatcatcaccgttcgtggaggagacggtggtcacggagcaatact |
7357077 |
T |
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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 7357130 - 7357188
Alignment:
| Q |
212 |
gcgattattgataatagtcataagaaaagcgcgttgaagagagattttgatgggtcttt |
270 |
Q |
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| T |
7357130 |
gcgattattgataatagtcataagaaaagcgcgttgaagagagattttgatgggtcttt |
7357188 |
T |
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