View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_35 (Length: 264)
Name: NF3683_low_35
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 40049427 - 40049175
Alignment:
| Q |
1 |
atcttatgactcctatacaaaacagtatgttgaccaacaacaaatcggaaaacaaaatatgaacaactaaaaatgatggagatgacacacaatttgattg |
100 |
Q |
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| T |
40049427 |
atcttatgactcctatacaaaacagtatgttgaccaacaacaaatcggaaaacaaaatatgaacaactaaaaatgatggagatgacacacaatttgattg |
40049328 |
T |
|
| Q |
101 |
tggaattcggtccattgtacctacatccgataatagtgtttggtttcattttgatcaaacgttacctggagttacaagttataacatgagtttaaatact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40049327 |
tggaattcggtccattgtacctacatccgataatagtgtttggtttcattttgatcaaacgttacttggagttacaagttataacatgagtttaaatact |
40049228 |
T |
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| Q |
201 |
acgactcaattctgctccgctcaccggactttcggtttcactcactgcccttt |
253 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40049227 |
acgactcaattctgctccgctcaccggacttttggtttcactcactgcccttt |
40049175 |
T |
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