View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_4 (Length: 685)
Name: NF3683_low_4
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 19 - 666
Target Start/End: Original strand, 42393501 - 42394148
Alignment:
| Q |
19 |
aatgaggcattagaagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaa |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393501 |
aatgagacattagaagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaa |
42393600 |
T |
|
| Q |
119 |
gttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactcaacggtattggag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42393601 |
gttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaattcaacggtattggag |
42393700 |
T |
|
| Q |
219 |
gatgtgtctgatccaccaagtaccatgtcctgttcatacaaactcaatggtattaagttcttcagcacgtgccttagggcacatgttagcattctcaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
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| T |
42393701 |
gatgtgtctgatccaccaagtaccatgtcctgttcatacaaactcaatggtattaagttcttcaacgcacgccttagggcacatgttagcattctcaaat |
42393800 |
T |
|
| Q |
319 |
aaattttaatttgaatcagagttaaataaaccatatgccgcnnnnnnnngtgagaagacgctaaacataaatgtgtaacaaaggtagcataccaggagaa |
418 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393801 |
aaattttaatttgaatcagagttaaacaaaccatataccgcaaaaaaaagtgagaagacgctaaacataaatgtgtaacaaaggtagcataccaggagaa |
42393900 |
T |
|
| Q |
419 |
gagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacnnnnnnnnnnnnnnntccttactttcactttcctttcc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
42393901 |
gagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaaatccttactttcactctcctttcc |
42394000 |
T |
|
| Q |
519 |
ttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatca |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394001 |
ttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatca |
42394100 |
T |
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| Q |
619 |
aaccgagccaacgaaggnnnnnnntccgacaagttcggcttccctatg |
666 |
Q |
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| T |
42394101 |
aaccgagccagcgcaggaaaaaaatctgacaagttcggcttccctatg |
42394148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 42387311 - 42387539
Alignment:
| Q |
32 |
aagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttccca |
131 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42387311 |
aagtggaagtgttgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttttgaatatgagactcttctactaagttatctttccca |
42387410 |
T |
|
| Q |
132 |
accactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatc |
231 |
Q |
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| T |
42387411 |
accacgatttccagttcctcttgaaccttcctcattacttctgg-ttgtccatcatttatgctattacaaactcaattgtgttggaggatgtgtctgatc |
42387509 |
T |
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| Q |
232 |
caccaagtaccatgtcctgttcatacaaac |
261 |
Q |
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|||| | |||||||||||||||||| |||| |
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| T |
42387510 |
cacccactaccatgtcctgttcatataaac |
42387539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 42376962 - 42377182
Alignment:
| Q |
32 |
aagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttccca |
131 |
Q |
| |
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||||||||||| ||||| |||||||| ||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42376962 |
aagtggaagtgcagggtgtaaacgaagagtttctttcatcactgcatgtaagtaggttagcttgtgaatatgagactcttctactaagttatcttttcca |
42377061 |
T |
|
| Q |
132 |
accactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatc |
231 |
Q |
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| T |
42377062 |
accacagtttctaactcctcttgaaccttcctcatcacttctggtttgttcatcatttctgccattacaaactcaattgtgttggaggatgtgtctgatc |
42377161 |
T |
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| Q |
232 |
caccaagtaccatgtcctgtt |
252 |
Q |
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|||| | |||||||||||||| |
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| T |
42377162 |
cacccactaccatgtcctgtt |
42377182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 537 - 630
Target Start/End: Original strand, 42378104 - 42378197
Alignment:
| Q |
537 |
tcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccaac |
630 |
Q |
| |
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|||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
42378104 |
tcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattcatatctttcacaacaccctgcaaatcaaaccgggccaac |
42378197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 480
Target Start/End: Original strand, 42377959 - 42378044
Alignment:
| Q |
395 |
aacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaac |
480 |
Q |
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|||||| ||||||||||| ||| |||||||| || || || |||| || |||||||| |||||||| |||||||||||||||||| |
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| T |
42377959 |
aacaaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaac |
42378044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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