View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_40 (Length: 244)
Name: NF3683_low_40
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 16953711 - 16953486
Alignment:
| Q |
19 |
acaataatgtattagatgggtacatgtgtggttttattaattttgttggatttgagcatgtagacaaaacacaaaacgtgagtctatcttgttcatatat |
118 |
Q |
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| T |
16953711 |
acaataatgtattagatgggtacatgtgtggttttattaattttgttggatttgagcatgtagacaaaacacaaaacgtgagtctatcttgttcatatat |
16953612 |
T |
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| Q |
119 |
gatcgtacaatcctagaatagacattcaataaaattattacaaggggttttattatgtaaaagtaaactttctcagtaatataattttgtgtccttatta |
218 |
Q |
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| T |
16953611 |
gatcgtacaatcctagaatagacattcaataaaattattacaaggggttttattatgtaaaagtaaactttctcagtaatataattttgtgtccttatta |
16953512 |
T |
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| Q |
219 |
catatagatgcatggttggttattat |
244 |
Q |
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| T |
16953511 |
catatagatgcatggttggttattat |
16953486 |
T |
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