View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_44 (Length: 227)
Name: NF3683_low_44
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_44 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 43513374 - 43513600
Alignment:
| Q |
1 |
ccttgtgtaacagctacctttcagacggttaagccgattcatagccacatacgacggtgattccacgaaggcatgaggtgaaccaggcagagagtgagtt |
100 |
Q |
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| T |
43513374 |
ccttgtgtaacagctacctttcagacggttaagccgattcacagccacatacgacggtgattccacgaaggcatgaggcgaaccaggcagagagtgagtt |
43513473 |
T |
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| Q |
101 |
gagctggacgaagaagacggaggaggagataatttcttgaatgatttgggcggtgaaagaatggctctgatcttcaatggatgaattaatgatgaagaag |
200 |
Q |
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| T |
43513474 |
gagctggacgaagaagacggaggaggagataatttcttgaatgatttgggcggtgaaagaatggctctgatcttcaatggatgaattaatgatgaagaag |
43513573 |
T |
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| Q |
201 |
cgcgatcgtattcttcaattatatttt |
227 |
Q |
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| T |
43513574 |
ctcgatcgtattcttcaattatatttt |
43513600 |
T |
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