View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_5 (Length: 678)
Name: NF3683_low_5
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 18 - 663
Target Start/End: Original strand, 56098475 - 56099121
Alignment:
| Q |
18 |
tcatttcattcatacatacatctgcatttatggacatgttaaaaatatttaatttgattaaaaaattaattcaactttcagtcaaaattgaaatggtatc |
117 |
Q |
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| T |
56098475 |
tcatttcattcatacatacatctgcatttatggacatgttaaaaatatttaatttgattaaaaaattaattcaactttcagtcaaaattgaaatggtatc |
56098574 |
T |
|
| Q |
118 |
aaatagtatttggattagattacatgaattttgtttgaccaaatta-----gttgagtattaaatatgaatgagatggatgcagcagtagcaggcgggac |
212 |
Q |
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| T |
56098575 |
aaata---tttggattagat-acatgaattttgtttgaccaaattaaattagttgagtattaaatatgaatgagatggatgcagcagtagcagg---gac |
56098667 |
T |
|
| Q |
213 |
gttgaagctatca---gtttctgagatgaacacgaggcagcaagtaggagaacagaacaacaatggaacagaacaagacaatgaatgcattgtgagggaa |
309 |
Q |
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| T |
56098668 |
gttgaagctatcatcagtttctgagatgaacacgaggcagcaagtaggagaacagaacaacaatggtacagaacaagacaatgaatgcattgtgagggaa |
56098767 |
T |
|
| Q |
310 |
caagaccgttttatgccaattgcaaatgtgataaggatcatgcgcaaaattctaccaccacatgcaaaaatatctgatgatgcaaaagaaacaatccaag |
409 |
Q |
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| T |
56098768 |
caagaccgttttatgccaattgcaaatgtgataaggatcatgcgcaagattctaccaccacatgcaaaaatatctgatgatgcaaaagaaacaatccaag |
56098867 |
T |
|
| Q |
410 |
agtgtgtgtctgagtacatcagcttcataactggagaagccaatgaacgttgtcagagagagcaaaggaagacaataactgcagaagatgtgctttgggc |
509 |
Q |
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| T |
56098868 |
agtgtgtgtctgagtacatcagcttcataactggagaagccaatgaacgttgtcagagagagcaaaggaagacaataactgcagaagatgtgctttgggc |
56098967 |
T |
|
| Q |
510 |
tatgagtaagcttggttttgatgattacattgaacctctaacaatgtaccttcatcgttatcgtgagcttgaaggtgatcgtacctcaatgagagttgaa |
609 |
Q |
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| T |
56098968 |
tatgagtaagcttggttttgatgattacattgaacctctaacaatgtaccttcatcgttatcgtgagcttgaaggtgatcgtacctcaatgagagttgaa |
56099067 |
T |
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| Q |
610 |
cctttgggaaagaggggtatggaatatggaaatttaggggggtttgtcccacag |
663 |
Q |
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| T |
56099068 |
cctttgggaaagaggggtatggaatatggaaatttaggggggtttgtcccacag |
56099121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 575
Target Start/End: Complemental strand, 14394287 - 14394082
Alignment:
| Q |
370 |
catgcaaaaatatctgatgatgcaaaagaaacaatccaagagtgtgtgtctgagtacatcagcttcataactggagaagccaatgaacgttgtcagagag |
469 |
Q |
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| T |
14394287 |
catgcaaaaatctccgacgacgcaaaagaaaccattcaagaatgtgtatccgaatacataagcttcataacatccgaagcaaacgatcgatgccaaagag |
14394188 |
T |
|
| Q |
470 |
agcaaaggaagacaataactgcagaagatgtgctttgggctatgagtaagcttggttttgatgattacattgaacctctaacaatgtaccttcatcgtta |
569 |
Q |
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| T |
14394187 |
aacaaagaaaaacagttacagcagaagatatactatgggcaatggggaaacttggttttgatgattatgttcatcctttaacattttaccttcaacgtta |
14394088 |
T |
|
| Q |
570 |
tcgtga |
575 |
Q |
| |
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||||| |
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| T |
14394087 |
ccgtga |
14394082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 449
Target Start/End: Original strand, 9722705 - 9722763
Alignment:
| Q |
391 |
gcaaaagaaacaatccaagagtgtgtgtctgagtacatcagcttcataactggagaagc |
449 |
Q |
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|||||||||||| | ||||||||||| || |||| ||||| ||||||||||||||||| |
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| T |
9722705 |
gcaaaagaaacagtacaagagtgtgtatcagagtttatcagtttcataactggagaagc |
9722763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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