View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3683_low_7 (Length: 586)

Name: NF3683_low_7
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3683_low_7
NF3683_low_7
[»] chr5 (2 HSPs)
chr5 (19-228)||(22919276-22919485)
chr5 (280-434)||(22919537-22919691)
[»] chr3 (4 HSPs)
chr3 (19-172)||(3523413-3523566)
chr3 (280-392)||(3523673-3523785)
chr3 (190-228)||(3523583-3523621)
chr3 (535-575)||(36153882-36153922)
[»] chr7 (2 HSPs)
chr7 (305-363)||(18004399-18004457)
chr7 (314-367)||(18004294-18004347)
[»] chr8 (2 HSPs)
chr8 (305-367)||(16804155-16804217)
chr8 (314-367)||(16804053-16804106)
[»] chr1 (1 HSPs)
chr1 (305-367)||(47735457-47735519)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 22919276 - 22919485
Alignment:
Q  19 gctagtccatgcaccatttatatttcataatatatatttacttgttaatcataaaaacatattagaaataacattcattgatcaatagatagagctgagt 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22919276 gctagtccatgcaccatttatatttcataatctatatttacttgttaatcataaaaacatattagaaataacattcattgatcaatagatagagctgagt 22919375  T
Q  119 acattcgaaccaaaagtctacatcgaccaatccataaaaggacaattattgaacnnnnnnnnnnnnnnnnnttgagttgtaagctcaatattaaccaaag 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||    
T  22919376 acattcgaaccaaaagtctacatagaccaatccataaaaggacaattattgaacaaaattaaaataaaaaattgagttgtaagctcaatattaaccaaag 22919475  T
Q  219 ttttggaatt 228  Q
    ||||||||||    
T  22919476 ttttggaatt 22919485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 280 - 434
Target Start/End: Original strand, 22919537 - 22919691
Alignment:
Q  280 gggactcatatttttagtcctctttctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcagaggcagagggggt 379  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  22919537 gggactcatatttttagtcctttttctcaatcttaacagatttgagcttgacagtctttgtagcagacacatctccagcatcagcagaggcagaggaggt 22919636  T
Q  380 gaaatccatcaaataattttcggcagaccttttcccagtaatcttgctgcatggg 434  Q
    |||||||||||||  |||||| || ||||||||||||||||||||| ||||||||    
T  22919637 gaaatccatcaaaacattttcagcggaccttttcccagtaatcttgttgcatggg 22919691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 3523413 - 3523566
Alignment:
Q  19 gctagtccatgcaccatttatatttcataatatatatttacttgttaatcataaaaacatattagaaataacattcattgatcaatagatagagctgagt 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3523413 gctagtccatgcaccatttatatttcataatctatatttacttgttactcataaaaacatattagaaataacattcattgatcaatagatagagatgagt 3523512  T
Q  119 acattcgaaccaaaagtctacatcgaccaatccataaaaggacaattattgaac 172  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  3523513 acattcgaaccaaaagtctacatcgaccaatccgtataaggacaattattgaac 3523566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 280 - 392
Target Start/End: Original strand, 3523673 - 3523785
Alignment:
Q  280 gggactcatatttttagtcctctttctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcagaggcagagggggt 379  Q
    |||||||||| | |||||||| |||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  3523673 gggactcatagtcttagtcctttttctcaatcttaacacatttgagcttgacagtctttatagcagacgcatctccagcatcagcagaggcagagggggt 3523772  T
Q  380 gaaatccatcaaa 392  Q
    |||||||||||||    
T  3523773 gaaatccatcaaa 3523785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 3523583 - 3523621
Alignment:
Q  190 ttgagttgtaagctcaatattaaccaaagttttggaatt 228  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  3523583 ttgagttgtacgctcaatattaaccaaagttttggaatt 3523621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 535 - 575
Target Start/End: Complemental strand, 36153922 - 36153882
Alignment:
Q  535 actcacatattcaacgtcgatctcaaccatatatgtcctat 575  Q
    ||||||||||||||||| ||| |||||||| ||||||||||    
T  36153922 actcacatattcaacgttgatttcaaccatgtatgtcctat 36153882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 18004457 - 18004399
Alignment:
Q  305 ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcag 363  Q
    |||||||||||||||||||||||||| || |||||||||||| | ||||||||||||||    
T  18004457 ctcaatcttaacagatttgagcttgacagactttgtagcagagaaatctccagcatcag 18004399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 18004347 - 18004294
Alignment:
Q  314 aacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga 367  Q
    ||||||||||||||||| |  ||| |||||||| ||||||||||||||||||||    
T  18004347 aacagatttgagcttgacaagcttagtagcagagacatctccagcatcagcaga 18004294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 16804217 - 16804155
Alignment:
Q  305 ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga 367  Q
    ||||||||||||| |||||||||||| || |||||||| ||| | ||||||||||||||||||    
T  16804217 ctcaatcttaacatatttgagcttgacaggctttgtagtagagaaatctccagcatcagcaga 16804155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 16804106 - 16804053
Alignment:
Q  314 aacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga 367  Q
    ||||||||||||||||| || ||| |||||||| |||||| || ||||||||||    
T  16804106 aacagatttgagcttgacaggcttagtagcagagacatctacaacatcagcaga 16804053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 47735519 - 47735457
Alignment:
Q  305 ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga 367  Q
    |||||||||||||||||||||||||| || ||| |||||||| | ||||||||||||| ||||    
T  47735519 ctcaatcttaacagatttgagcttgacaggcttcgtagcagagaaatctccagcatcaacaga 47735457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University