View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_low_8 (Length: 558)
Name: NF3683_low_8
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 19 - 551
Target Start/End: Complemental strand, 49584867 - 49584339
Alignment:
| Q |
19 |
agcaatgccattaccggccgttggagacaacctttgctccttcctcattttcagaacctgcaacaccaccactaccagaaccttccactttacgacacac |
118 |
Q |
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| T |
49584867 |
agcaatgccatta----ccgttggagacaacctttgctccttcctcattttcagaacctgcaacaccaccactaccagaaccttccactttacgacacac |
49584772 |
T |
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| Q |
119 |
atgtcgtgaaggttttgatactaaacagtcctcctgacttctgttgcgcttctttttgtctagatatccaaatgcgaaagcctccggaactttctcccga |
218 |
Q |
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| T |
49584771 |
atgtcgtgaaggttttgatactaaacagtcctcctgacttctgttgcgcttctttttgtctagatatccaaatgcaaaagcctccggaactttctcccga |
49584672 |
T |
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| Q |
219 |
ggtggaattaccgttgcatttttctctagatcaatgagctcaggattggacgcaactttattgaggatttcaaacggagaatcgaaatattgtaccccct |
318 |
Q |
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| T |
49584671 |
ggtggaattaccgttgcatttttctctagatcaatgagctcaggattggacgcaactttattgaggatttcaaacggagaatcgaaatattgtaccccct |
49584572 |
T |
|
| Q |
319 |
tcagcagattcctcgaaaactgtttaactcgagggacaaggaagaccatagaattcttacaaggaacataattataacatctaggttcctccgagtgcca |
418 |
Q |
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| T |
49584571 |
tcagcagattccttgaaaactgtttaactcgggggacaaggaagaccatagaattcttacaaggaacataattataacatctaggttcctccgagtgcca |
49584472 |
T |
|
| Q |
419 |
acctcttgcaagtagacgaggccaaacggcttcccgaaagagatcatcagttcgagatttacttaatctgaaatttcctgtcagaaagcttattatttct |
518 |
Q |
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| T |
49584471 |
acctcttgcaagtagacgaggccaaacggcttcccaaaagagatcatcagttcgagatttacttaatctgaagtttcctgtcagaaagcttattatttct |
49584372 |
T |
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| Q |
519 |
gagggttcaagcattgcacaagcttttcccttc |
551 |
Q |
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| T |
49584371 |
gagggttcaagcattgcacaagcttttcccttc |
49584339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 465
Target Start/End: Original strand, 15769547 - 15769610
Alignment:
| Q |
402 |
ggttcctccgagtgccaacctcttgcaagtagacgaggccaaacggcttcccgaaagagatcat |
465 |
Q |
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| T |
15769547 |
ggttgctcagagtgccaacctcttgccagtaagcgaggccaaacagcttcccagaagagatcat |
15769610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 463
Target Start/End: Original strand, 46643132 - 46643193
Alignment:
| Q |
402 |
ggttcctccgagtgccaacctcttgcaagtagacgaggccaaacggcttcccgaaagagatc |
463 |
Q |
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|||| ||| ||||||||||||||||| |||| ||||||||||| ||||||| |||||||| |
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| T |
46643132 |
ggttgctcagagtgccaacctcttgccagtaatcgaggccaaacagcttcccagaagagatc |
46643193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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