View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3684_high_2 (Length: 374)

Name: NF3684_high_2
Description: NF3684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3684_high_2
NF3684_high_2
[»] chr7 (21 HSPs)
chr7 (14-373)||(21826258-21826617)
chr7 (13-88)||(9408334-9408409)
chr7 (11-86)||(15902804-15902879)
chr7 (15-94)||(26733290-26733369)
chr7 (22-87)||(11665441-11665506)
chr7 (11-88)||(22602710-22602787)
chr7 (15-87)||(19206036-19206108)
chr7 (16-60)||(35861951-35861995)
chr7 (14-88)||(6630912-6630986)
chr7 (11-93)||(20549773-20549855)
chr7 (15-81)||(22868028-22868094)
chr7 (22-88)||(24339635-24339701)
chr7 (37-94)||(3721101-3721158)
chr7 (27-88)||(3991322-3991383)
chr7 (14-87)||(5835232-5835305)
chr7 (11-88)||(26329382-26329459)
chr7 (15-88)||(27945027-27945100)
chr7 (15-88)||(32308106-32308179)
chr7 (49-93)||(18226964-18227008)
chr7 (11-87)||(22484007-22484083)
chr7 (22-94)||(25481895-25481967)
[»] chr8 (16 HSPs)
chr8 (19-88)||(11944655-11944724)
chr8 (15-88)||(4786338-4786411)
chr8 (19-88)||(11927086-11927155)
chr8 (15-88)||(15816129-15816202)
chr8 (11-60)||(4298914-4298963)
chr8 (15-80)||(36934656-36934721)
chr8 (22-93)||(13844591-13844662)
chr8 (15-94)||(36450748-36450827)
chr8 (37-94)||(4948660-4948717)
chr8 (15-88)||(13436964-13437037)
chr8 (37-94)||(14134707-14134764)
chr8 (15-88)||(22651962-22652035)
chr8 (11-92)||(24669415-24669496)
chr8 (15-88)||(31109518-31109591)
chr8 (22-94)||(31236571-31236643)
chr8 (37-93)||(34897093-34897149)
[»] chr2 (15 HSPs)
chr2 (15-94)||(30404844-30404923)
chr2 (15-93)||(18421949-18422027)
chr2 (15-94)||(15972859-15972938)
chr2 (37-94)||(5473336-5473393)
chr2 (11-88)||(12668423-12668500)
chr2 (11-88)||(36756344-36756421)
chr2 (11-94)||(37411238-37411321)
chr2 (15-93)||(20242722-20242800)
chr2 (37-94)||(5367200-5367257)
chr2 (15-88)||(15657850-15657923)
chr2 (22-94)||(19536391-19536464)
chr2 (37-94)||(34691799-34691856)
chr2 (37-94)||(34714211-34714268)
chr2 (15-71)||(21374716-21374772)
chr2 (24-88)||(28677904-28677967)
[»] chr3 (18 HSPs)
chr3 (16-94)||(10954939-10955017)
chr3 (15-93)||(25093488-25093566)
chr3 (37-94)||(7928458-7928515)
chr3 (14-88)||(26290356-26290430)
chr3 (37-94)||(45451561-45451618)
chr3 (11-95)||(16000009-16000093)
chr3 (27-94)||(7614409-7614476)
chr3 (47-94)||(40993329-40993376)
chr3 (15-94)||(55401061-55401140)
chr3 (22-96)||(8383250-8383324)
chr3 (22-88)||(18426942-18427008)
chr3 (22-88)||(34910310-34910376)
chr3 (15-60)||(10268514-10268559)
chr3 (18-87)||(13807158-13807227)
chr3 (15-95)||(25775494-25775575)
chr3 (15-88)||(25948887-25948960)
chr3 (11-71)||(3610615-3610675)
chr3 (22-94)||(8789544-8789616)
[»] scaffold0171 (1 HSPs)
scaffold0171 (11-88)||(23402-23479)
[»] chr5 (14 HSPs)
chr5 (11-60)||(41995453-41995502)
chr5 (16-94)||(6247609-6247687)
chr5 (12-88)||(16374342-16374418)
chr5 (49-93)||(17925167-17925211)
chr5 (22-94)||(28588668-28588740)
chr5 (15-93)||(21191051-21191129)
chr5 (15-88)||(3966489-3966562)
chr5 (15-60)||(10298555-10298600)
chr5 (15-88)||(13287399-13287472)
chr5 (15-88)||(16203795-16203868)
chr5 (15-60)||(19552571-19552616)
chr5 (37-94)||(30502382-30502439)
chr5 (37-94)||(30542725-30542782)
chr5 (15-87)||(21351906-21351978)
[»] chr1 (27 HSPs)
chr1 (13-86)||(13997867-13997940)
chr1 (15-96)||(52903235-52903316)
chr1 (15-94)||(22881610-22881689)
chr1 (15-94)||(37598818-37598896)
chr1 (22-88)||(9828037-9828103)
chr1 (15-81)||(23622304-23622370)
chr1 (14-87)||(36878446-36878519)
chr1 (11-88)||(47989480-47989556)
chr1 (27-95)||(1864873-1864941)
chr1 (11-87)||(5898267-5898343)
chr1 (27-87)||(40258934-40258994)
chr1 (37-88)||(1486709-1486760)
chr1 (15-81)||(398772-398838)
chr1 (15-93)||(9103626-9103703)
chr1 (16-86)||(10572591-10572661)
chr1 (22-88)||(24577186-24577252)
chr1 (11-88)||(7918211-7918288)
chr1 (39-88)||(44482240-44482289)
chr1 (15-87)||(1815243-1815315)
chr1 (11-88)||(5944263-5944342)
chr1 (40-92)||(7353489-7353541)
chr1 (15-95)||(13436444-13436524)
chr1 (24-88)||(25361881-25361945)
chr1 (49-93)||(30749860-30749904)
chr1 (49-93)||(30771311-30771355)
chr1 (15-87)||(38503306-38503378)
chr1 (37-93)||(40181879-40181935)
[»] chr6 (24 HSPs)
chr6 (16-88)||(7801156-7801228)
chr6 (15-87)||(19044450-19044522)
chr6 (22-94)||(34595127-34595199)
chr6 (15-94)||(5732504-5732583)
chr6 (11-86)||(16833290-16833365)
chr6 (15-93)||(7265588-7265666)
chr6 (22-92)||(20371106-20371176)
chr6 (15-88)||(9107370-9107443)
chr6 (15-88)||(10770674-10770747)
chr6 (15-88)||(16766683-16766756)
chr6 (11-71)||(1681740-1681800)
chr6 (37-93)||(12627572-12627628)
chr6 (22-94)||(19040345-19040417)
chr6 (22-94)||(33001283-33001355)
chr6 (15-94)||(426508-426587)
chr6 (15-89)||(7027227-7027302)
chr6 (15-94)||(8776967-8777046)
chr6 (37-88)||(9025494-9025545)
chr6 (15-60)||(7930291-7930336)
chr6 (15-88)||(8365519-8365592)
chr6 (15-88)||(9027164-9027237)
chr6 (15-87)||(7938102-7938174)
chr6 (22-82)||(10842525-10842585)
chr6 (17-81)||(17341671-17341735)
[»] chr4 (12 HSPs)
chr4 (22-94)||(36409506-36409577)
chr4 (22-94)||(36423672-36423743)
chr4 (15-94)||(40179630-40179709)
chr4 (11-81)||(14126118-14126188)
chr4 (24-94)||(54580017-54580087)
chr4 (22-94)||(12895268-12895340)
chr4 (22-94)||(23292980-23293052)
chr4 (28-87)||(5775359-5775418)
chr4 (11-60)||(19482650-19482699)
chr4 (11-88)||(21945485-21945562)
chr4 (15-80)||(36635310-36635375)
chr4 (15-87)||(35157986-35158058)
[»] scaffold0020 (1 HSPs)
scaffold0020 (11-88)||(135312-135389)
[»] scaffold0050 (1 HSPs)
scaffold0050 (11-94)||(70260-70343)
[»] scaffold0027 (1 HSPs)
scaffold0027 (22-89)||(46675-46742)
[»] scaffold0110 (1 HSPs)
scaffold0110 (16-86)||(28837-28907)
[»] scaffold0361 (1 HSPs)
scaffold0361 (22-71)||(14523-14572)
[»] scaffold0168 (1 HSPs)
scaffold0168 (15-84)||(21029-21098)
[»] scaffold0136 (1 HSPs)
scaffold0136 (11-88)||(3849-3926)
[»] scaffold0652 (1 HSPs)
scaffold0652 (10-94)||(456-540)
[»] scaffold0103 (1 HSPs)
scaffold0103 (15-71)||(51797-51853)
[»] scaffold0011 (1 HSPs)
scaffold0011 (15-87)||(17750-17822)


Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 21826258 - 21826617
Alignment:
Q  14 agacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacgtgctttccctttgattgtt 113  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21826258 agacactaacacgccgacacgactaataatttaaaaaaatcacataactcagtctaataatatgtgtcggtgtcggacacgtgctttccctttgattgtt 21826357  T
Q  114 cactttgaatttcatttacatttcttgtatcttgtctataatgtttatgtagcttactaaccaaaagcatatatatcatcaaaattgccacacatgatat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21826358 cactttgaatttcatttacatttcttgtatcttgtctataatgtttatgtagcttactaaccaaaagcatacatatcatcaaaattgccacacatgatat 21826457  T
Q  214 gccaatctaataagaaaaactcaatttacatttaacctgtgccatttcttgctctttcatatggaaaaagttactaattttaattttacaaaatgttaag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21826458 gccaatctaataagaaaaactcaatttacatttaacctgtgccatttcttgctctttcatatggaaaaagttactaattttaattttacaaaatgttaag 21826557  T
Q  314 cagggcttccaaaaagatgagcttgcctacccatccttcttggcaatccaaaattctgat 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21826558 cagggcttccaaaaagatgagcttgcctacccatccttcttggcaatccaaaattctgat 21826617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 9408409 - 9408334
Alignment:
Q  13 cagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||| |||| ||||||| |||||||||| ||||||||||||||| | ||| |||| | | ||||||||||||    
T  9408409 cagacactgacacaccgacacaattaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 9408334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 15902804 - 15902879
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgt 86  Q
    |||||||||| ||| |||||||| | |||||||| || |||||||||||| | ||| |||| ||||||||||||||    
T  15902804 cacagacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaattatatgtgtcggtgt 15902879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 26733290 - 26733369
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| ||||| ||||||   |||||||| || |||||||||||| |||||||||| | |||||||||||||| |||||    
T  26733290 gacactgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaattaaatgtgtcggtgtcggacacg 26733369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 11665506 - 11665441
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||||| ||||| | |||||||| ||||||||||||||| |||||||||| ||| |||||| ||||    
T  11665506 acacgctgacacaactaataatttgaaaaaatcacataattcagtctaattataagtgtcgatgtc 11665441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 22602787 - 22602710
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    ||||| |||| ||||||||||||  | ||| ||| || |||||||||||| ||||| |||| ||||||||||||||||    
T  22602787 cacaggcactgacacgccgacaccgtaaattatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 19206036 - 19206108
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    ||||| |||||||||||||   |||||||| || |||||||||||| ||| | |||| |||||||||||||||    
T  19206036 gacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtc 19206108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 35861951 - 35861995
Alignment:
Q  16 acactaacacgccgacacgattaataattcgaaaaaatcacataa 60  Q
    |||||||||||||||||| | |||||||| |||||||||||||||    
T  35861951 acactaacacgccgacacaactaataatttgaaaaaatcacataa 35861995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 6630986 - 6630912
Alignment:
Q  14 agacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    ||||||| |||||||||||| | |||||||| || ||| |||| ||| ||||| |||| |||||||||| |||||    
T  6630986 agacactgacacgccgacaccactaataatttgagaaagtcacttaattcagtgtaattatatgtgtcgatgtcg 6630912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 20549773 - 20549855
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||| ||||| |||| |||||||   |||||||| || |||||||| ||| ||||| |||| |||||||||||||||| ||||    
T  20549773 cacatacactgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacac 20549855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 22868028 - 22868094
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtc 81  Q
    |||||| |||||||||||| | |||||||  || |||||||||||| ||||| |||| |||||||||    
T  22868028 gacactgacacgccgacaccactaataatatgagaaaatcacataattcagtgtaattatatgtgtc 22868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 24339635 - 24339701
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    ||||||||||||   |||||||| ||||||||||||||| ||||| |||| | | ||||||||||||    
T  24339635 acacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 3721101 - 3721158
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| || |||||||||||| | ||| |||| |||||||||||||||| |||||    
T  3721101 taataatttgagaaaatcacataatttagtataattatatgtgtcggtgtcggacacg 3721158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 3991322 - 3991383
Alignment:
Q  27 ccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    ||||||| | |||||||| ||||||||||||||| ||||| |||| | | ||||||||||||    
T  3991322 ccgacacaactaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcg 3991383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 5835232 - 5835305
Alignment:
Q  14 agacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    ||||||| | |||||||||| | ||||| || || ||||| |||||| ||||| |||| |||||||||||||||    
T  5835232 agacactgatacgccgacaccactaatagtttgagaaaataacataattcagtgtaattatatgtgtcggtgtc 5835305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 26329459 - 26329382
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||| |||||||||||   ||||||||| || |||| |||| || ||||| |||| ||||||||||| ||||    
T  26329459 cacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaattatatgtgtcggcgtcg 26329382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 27945027 - 27945100
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| |||||||||||| | |||||||| || ||||| |||||| ||||| |||| | | ||||||||||||    
T  27945027 gacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcg 27945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 32308106 - 32308179
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||||||||||||   |||||||| || |||||||||||| ||||| ||||  |||||||| ||||||    
T  32308106 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcg 32308179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 18226964 - 18227008
Alignment:
Q  49 aaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    ||||||| |||| ||||| |||| |||||||||||||||||||||    
T  18226964 aaaatcatataattcagtataatcatatgtgtcggtgtcgaacac 18227008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 22484007 - 22484083
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||||||||| ||||||||||||   ||||||||  | |||||  ||||| ||||| |||| |||||||||||||||    
T  22484007 cacagacactgacacgccgacaccgctaataattttagaaaattgcataattcagtataattatatgtgtcggtgtc 22484083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 25481895 - 25481967
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    ||||||||||||   |||||||| ||||||||||||||| ||||| |||| | | |||| ||||||| |||||    
T  25481895 acacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtcggacacg 25481967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 11944655 - 11944724
Alignment:
Q  19 ctaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||||||||  ||||||||| || |||||||||||||||||| |||| ||||||||||||||||    
T  11944655 ctaacacgccgacactgttaataatttgataaaatcacataactcagtgtaattatatgtgtcggtgtcg 11944724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 4786411 - 4786338
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| |||||||||||| ||||||||||  | |||||||||||| ||||| |||| ||||||||||||||||    
T  4786411 gacactgacacgccgacaccattaataatttaagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 11927155 - 11927086
Alignment:
Q  19 ctaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||| ||||||||||  ||||||||| || |||||||||||| ||||| |||| ||||||||||||||||    
T  11927155 ctaatacgccgacactgttaataatttgataaaatcacataattcagtgtaattatatgtgtcggtgtcg 11927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 15816202 - 15816129
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| |||||||||||| | |||||||| ||||||||||||||| | ||| |||| ||| ||||||||||||    
T  15816202 gacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcg 15816129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 4298963 - 4298914
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataa 60  Q
    |||||| ||||||||||||||||  ||||||||| |||||||||||||||    
T  4298963 cacagatactaacacgccgacacagttaataatttgaaaaaatcacataa 4298914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 36934656 - 36934721
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgt 80  Q
    |||||||||||| ||||||   |||||||||||||||||||||||| ||| | |||| ||||||||    
T  36934656 gacactaacacgtcgacaccgctaataattcgaaaaaatcacataattcattgtaattatatgtgt 36934721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 13844662 - 13844591
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    ||||||||||||   |||||||| || |||||||||||| | ||| |||| |||||||||||||||| ||||    
T  13844662 acacgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 36450827 - 36450748
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| |||||||||||| | |||||||| |||||||||||| || ||||| |||| | | |||| ||||||| |||||    
T  36450827 gacactgacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacg 36450748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 4948660 - 4948717
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| ||||||||||||||| ||||| |||| | | |||||||||||| |||||    
T  4948660 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacg 4948717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 13437037 - 13436964
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||||||||||||   |||||||| ||||||||||||||| |||   |||||| | ||||||||||||    
T  13437037 gacactgacacgccgacacagctaataatttgaaaaaatcacataattcatggtaataacaagtgtcggtgtcg 13436964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 14134707 - 14134764
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| || |||||||||||| ||||| |||| |||| |||||||||| ||||||    
T  14134707 taataatttgagaaaatcacataattcagtgtaattatatatgtcggtgtcaaacacg 14134764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 22651962 - 22652035
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||||||||||||   |||||||| ||||||||||||||| ||| | |||| | | ||||||||||||    
T  22651962 gacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcg 22652035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 24669415 - 24669496
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaaca 92  Q
    |||||||||| |||||| |||||  ||||||||| ||  |||| |||||| ||||| |||| | | ||||||||||||||||    
T  24669415 cacagacactgacacgctgacaccgttaataatttgaggaaattacataattcagtgtaattacaagtgtcggtgtcgaaca 24669496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 31109591 - 31109518
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||||||||||||  ||||||||| || ||||||| | || |||||||||  ||||||||| ||||||    
T  31109591 gacactgacacgccgacaccgttaataatttgagaaaatcaaacaattcagtctaactatatgtgtcagtgtcg 31109518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 31236643 - 31236571
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    ||||||||||||   |||||||| || |||||||||||| ||| | |||| ||||||||||||| || |||||    
T  31236643 acacgccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgacggacacg 31236571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 34897093 - 34897149
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||||| || |||||||||||| ||||| |||| |||||||||| ||||| ||||    
T  34897093 taataatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcggacac 34897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 30404923 - 30404844
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||| ||||| |||| | | ||||||| |||| |||||    
T  30404923 gacactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggcgtcggacacg 30404844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 18421949 - 18422027
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||| |||||||||||| ||||||||||  |||| ||||||||| ||||| |||| | | |||||||||||||||||    
T  18421949 gacactgacacgccgacacaattaataatttaaaaatatcacataattcagtgtaattacaagtgtcggtgtcgaacac 18422027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 15972859 - 15972938
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| |||||||||||| |||||||||| |||||||| ||| || ||||| |||| | | |||||||||||| |||||    
T  15972859 gacactgacacgccgacacaattaataatttgaaaaaattacacaattcagtgtaattacaagtgtcggtgtcggacacg 15972938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 5473336 - 5473393
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| ||||||||||||||| || || ||||| ||||||||||||||| |||||    
T  5473336 taataatttgaaaaaatcacataattcggtgtaatattatgtgtcggtgtcggacacg 5473393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 12668500 - 12668423
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||| |||||||||||  | |||||||| |||||||| |||||| ||||| |||| ||| ||||||||||||    
T  12668500 cacagatactgacacgccgacataactaataatttgaaaaaatgacataattcagtgtaattataagtgtcggtgtcg 12668423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 36756421 - 36756344
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||| ||||| |||||| | |||||||| ||| |||| |||||| ||||| |||| ||| ||||||||||||    
T  36756421 cacagacactgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaattataagtgtcggtgtcg 36756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 37411321 - 37411238
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    ||||||| || ||| ||||||||   |||||||| || |||||||||||| ||||| | || |||||||||| |||||||||||    
T  37411321 cacagacgctgacatgccgacaccgctaataatttgagaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacg 37411238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 20242800 - 20242722
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||| |||||||||||| | ||||  ||  | |||||||||||| ||||| |||| |||||||||||||||| ||||    
T  20242800 gacactgacacgccgacacaactaatttttttagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 20242722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 5367200 - 5367257
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| ||  ||||||||||| ||||| |||| |||||||||||||||| |||||    
T  5367200 taataatttgaggaaatcacataattcagtgtaattatatgtgtcggtgtcggacacg 5367257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 15657850 - 15657923
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    ||||||||||||||||| | | |||||||| | ||||||||||||| ||||| |||| | |  |||||||||||    
T  15657850 gacactaacacgccgactcaactaataatttgtaaaaatcacataattcagtgtaattacaaatgtcggtgtcg 15657923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 19536464 - 19536391
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaa-tcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||||||| | |||||||| ||||||| |||||||| ||||| |||| | | |||||||||||| |||||    
T  19536464 acacgccgacacaactaataatttgaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacg 19536391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 34691856 - 34691799
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| || ||||||| |||| ||||| |||| |||||||||||||||| |||||    
T  34691856 taataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34691799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 34714268 - 34714211
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| || ||||||| |||| ||||| |||| |||||||||||||||| |||||    
T  34714268 taataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34714211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 21374772 - 21374716
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaat 71  Q
    |||||||||||||||||||   |||||||| |||||||| |||||| ||||| ||||    
T  21374772 gacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaat 21374716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 28677904 - 28677967
Alignment:
Q  24 acgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    ||||||||||   |||||||| ||||||||||||||| ||||| |||| |||||| |||||||||    
T  28677904 acgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgt-tcggtgtcg 28677967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 10954939 - 10955017
Alignment:
Q  16 acactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    ||||| |||||||||||| | |||||||| ||||||||||||||| ||||| |||| | | |||||||||||| |||||    
T  10954939 acactgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacg 10955017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 25093488 - 25093566
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||||||||||||||||  ||||| ||| || ||||||||| || ||||| |||| |||||||||||||||| ||||    
T  25093488 gacactaacacgccgacactgttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacac 25093566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 7928458 - 7928515
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| ||||||||||||||| ||||| |||| |||||||||||||||| |||||    
T  7928458 taataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacg 7928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 26290356 - 26290430
Alignment:
Q  14 agacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    ||||||| |||||||||||| |||||||||| || |||||||||||  || || |||| ||||||||| ||||||    
T  26290356 agacactgacacgccgacaccattaataatttgagaaaatcacatagttcggtttaattatatgtgtcagtgtcg 26290430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 45451561 - 45451618
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| || |||||||||||  ||||| ||||||||||||||||||||| |||||    
T  45451561 taataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacacg 45451618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 16000093 - 16000009
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacgt 95  Q
    |||||||||| |||||||||||| | ||||||||  ||||||| |||||| ||||| |||  | | |||||||||||| ||||||    
T  16000093 cacagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaactacaagtgtcggtgtcggacacgt 16000009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 7614476 - 7614409
Alignment:
Q  27 ccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||  |||||||||  | |||||||||||| ||||| |||| |||| |||||||||||||||||    
T  7614476 ccgacacagttaataatttaagaaaatcacataattcagtataattatatatgtcggtgtcgaacacg 7614409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 40993376 - 40993329
Alignment:
Q  47 aaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||||||||| ||||| |||| |||||||||||||||| |||||    
T  40993376 aaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacg 40993329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 55401061 - 55401140
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| | |||||||||| | |||||||| ||||||||||||||| | ||| |||| | | |||||||||||| |||||    
T  55401061 gacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacg 55401140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 8383250 - 8383324
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacgtg 96  Q
    ||||||||||||   |||||||| || ||||||| |||| ||||| |||| ||| |||||||||||| |||||||    
T  8383250 acacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcggacacgtg 8383324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 18426942 - 18427008
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||||| | ||||||||  |||||||||||||| || || |||| |||| |||||||||||    
T  18426942 acacgccgacaccactaataatttcaaaaaatcacataattcggtgtaattatatatgtcggtgtcg 18427008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 34910310 - 34910376
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||||| | |||||||| ||||||||||||||| ||||| |||| | | | ||||||||||    
T  34910310 acacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagagtcggtgtcg 34910376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 10268559 - 10268514
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataa 60  Q
    |||||| ||||||||||||  ||||||||| |||||||||||||||    
T  10268559 gacactgacacgccgacacagttaataatttgaaaaaatcacataa 10268514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 13807158 - 13807227
Alignment:
Q  18 actaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    ||||||||||| ||||   ||| |||| || |||||||||||| ||| | ||||||||||||||||||||    
T  13807158 actaacacgccaacactgataacaatttgagaaaatcacataattcaatataataatatgtgtcggtgtc 13807227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 25775494 - 25775575
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaa-aatcacataactcagtctaataatatgtgtcggtgtcgaacacgt 95  Q
    |||||| ||||||| ||||  ||||||||| ||||| |||||||||| ||||| |||| | | |||||||||||| ||||||    
T  25775494 gacactgacacgccaacacatttaataatttgaaaataatcacataattcagtgtaattacaagtgtcggtgtcggacacgt 25775575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 25948960 - 25948887
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||| ||||| |||  |||||||| ||||||||||||||| ||||| |||| ||| |||| |||||||    
T  25948960 gacactgacatgccgatacggctaataatttgaaaaaatcacataattcagtgtaattataagtgttggtgtcg 25948887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 3610615 - 3610675
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaat 71  Q
    |||||||||| ||||||| ||||  |||||||||  ||||||| |||||||||||| ||||    
T  3610615 cacagacactgacacgccaacacagttaataatttaaaaaaataacataactcagtgtaat 3610675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 8789616 - 8789544
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||| ||||||||  | |||||| || |||||||||||| || || |||| |||||||||||||||| |||||    
T  8789616 acacaccgacacggcttataatttgagaaaatcacataattccgtgtaattatatgtgtcggtgtcggacacg 8789544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 23402 - 23479
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||| ||||||||||||   |||||| || |||||||||||||| ||||| |||| ||| ||||||||||||    
T  23402 cacagacactgacacgccgacacagataataactcaaaaaaatcacataattcagtgtaattataagtgtcggtgtcg 23479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 41995453 - 41995502
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataa 60  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  41995453 cacagacactgacacgccgacacaactaataattcgaaaaaatcacataa 41995502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 6247609 - 6247687
Alignment:
Q  16 acactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    ||||| ||||||||||||   |||||||| ||||||||||||||| ||||| |||| | | |||||||||||| |||||    
T  6247609 acactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacg 6247687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 16374418 - 16374342
Alignment:
Q  12 acagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    ||||||||||||||| |||||   |||||||||  ||||||| |||||| ||||| |||| | ||||||||||||||    
T  16374418 acagacactaacacgtcgacatcgttaataattgaaaaaaataacataaatcagtgtaattacatgtgtcggtgtcg 16374342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 17925211 - 17925167
Alignment:
Q  49 aaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||    
T  17925211 aaaatcacataattcaatgtaataatatgtgtcggtgtcgaacac 17925167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 28588740 - 28588668
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    ||||||||||||   |||||||| || |||||||||||| ||||| |||| ||| |||||||||||| |||||    
T  28588740 acacgccgacaccggtaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacacg 28588668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 21191129 - 21191051
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||| ||| ||||||||   |||||||| ||||||||||||||| ||||| |||| | | |||||||||||| ||||    
T  21191129 gacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 21191051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 3966489 - 3966562
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||| ||||||||   |||||||| || ||||||||| || ||||| |||| ||||||||||||||||    
T  3966489 gacactgacatgccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 3966562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 10298555 - 10298600
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataa 60  Q
    ||||||||||||||||||| | |||||||| |||||| ||||||||    
T  10298555 gacactaacacgccgacacaactaataatttgaaaaagtcacataa 10298600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 13287472 - 13287399
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||||| ||||||   |||||||| ||||||||||||||| ||||| |||  | | ||||||||||||    
T  13287472 gacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaagtgtcggtgtcg 13287399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 16203868 - 16203795
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||| ||||||||   |||||||| || |||||| ||||| | ||| |||| ||||||||||||||||    
T  16203868 gacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattatatgtgtcggtgtcg 16203795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 19552616 - 19552571
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataa 60  Q
    |||||| ||||||||||||  ||||||||| |||||||||||||||    
T  19552616 gacactgacacgccgacacagttaataatttgaaaaaatcacataa 19552571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 30502439 - 30502382
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| || |||||||| ||| ||||| |||| |||||||||||||||| |||||    
T  30502439 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacg 30502382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 30542782 - 30542725
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||| || |||||||| ||| ||||| |||| |||||||||||||||| |||||    
T  30542782 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacg 30542725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 21351978 - 21351906
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||||| |||| ||||||| | |||||||| |||||| |||||||| ||||| |||| | | |||||||||||    
T  21351978 gacactgacacaccgacacaactaataattggaaaaagtcacataattcagtgtaattacaagtgtcggtgtc 21351906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 13997867 - 13997940
Alignment:
Q  13 cagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgt 86  Q
    |||||||| ||||||||||||  ||||| |||  |||||||||||||| ||||| |||| ||||||||||||||    
T  13997867 cagacactgacacgccgacaccgttaattatttaaaaaaatcacataattcagtgtaattatatgtgtcggtgt 13997940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 52903235 - 52903316
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacgtg 96  Q
    |||||||||||||||| ||  |||||||||  | ||||||| |||| ||||| |||| |||||||||||||||| |||||||    
T  52903235 gacactaacacgccgataccgttaataatttaataaaatcatataattcagtgtaattatatgtgtcggtgtcggacacgtg 52903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 22881689 - 22881610
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| |||||||||||| | |||||||| ||||||||||||||| | ||| |||| | | |||||||||||| |||||    
T  22881689 gacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacg 22881610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 37598818 - 37598896
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| |||||||||||| | |||||||| |||||||||||| || ||||| |||| ||| |||||||||||| |||||    
T  37598818 gacactgacacgccgacacaactaataatttgaaaaaatcaca-aattcagtgtaattataagtgtcggtgtcggacacg 37598896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 9828037 - 9828103
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||||| | |||||||| || |||||||||||| ||||| ||||  |||||||||||||||    
T  9828037 acacgccgacaccactaataatttgataaaatcacataattcagtgtaattttatgtgtcggtgtcg 9828103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 23622304 - 23622370
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtc 81  Q
    ||||||||||||||||||| | ||||| ||  |||||||||||||||||||| |||| | |||||||    
T  23622304 gacactaacacgccgacaccactaatagtttaaaaaaatcacataactcagtgtaattaaatgtgtc 23622370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 36878446 - 36878519
Alignment:
Q  14 agacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    ||||||| ||||||||||||   |||||||| || |||||||||||| ||||| |||| ||| |||||||||||    
T  36878446 agacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtc 36878519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 47989480 - 47989556
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||| |||||||||||| || |||||||  |||||||||||||| ||||| |||| | | ||||||||||||    
T  47989480 cacagacactgacacgccgacacaat-aataatttaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 47989556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 1864941 - 1864873
Alignment:
Q  27 ccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacgt 95  Q
    |||||||  ||||||||| || |||||||||||| ||||| |||| |||||||||||||| | ||||||    
T  1864941 ccgacacagttaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgttggacacgt 1864873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 5898343 - 5898267
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||||||||| | ||||||||||   |||||||  ||||||||||||||| ||||| |||| ||||| |||||||||    
T  5898343 cacagacactgagacgccgacaccgctaataatctgaaaaaatcacataattcagtgtaattatatgcgtcggtgtc 5898267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 40258994 - 40258934
Alignment:
Q  27 ccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    ||||||| |||||||||| ||||||||||||||| ||||| |||| | | |||||||||||    
T  40258994 ccgacacaattaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 40258934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 1486760 - 1486709
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||| ||||||||||||||| ||||| |||| ||| ||||||||||||    
T  1486760 taataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcg 1486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 398838 - 398772
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtc 81  Q
    |||||| ||||||||||||   |||||||| ||||||||||||||| ||||| |||| ||| |||||    
T  398838 gacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattataggtgtc 398772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 9103626 - 9103703
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||| ||||||||||||  ||||||||| ||||||||||||||| | ||| |||| | | |||||||||||| ||||    
T  9103626 gacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtttaat-acaagtgtcggtgtcggacac 9103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 10572661 - 10572591
Alignment:
Q  16 acactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgt 86  Q
    ||||| |||||||||||| | |||||||| || |||||||||||| || || |||| | ||||||||||||    
T  10572661 acactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaattaaatgtgtcggtgt 10572591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 24577252 - 24577186
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||||| | |||||||| ||||||||||||||| ||||| |||| | | ||||||||||||    
T  24577252 acacgctgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 24577186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 7918288 - 7918211
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||| | |||||| ||||  | |||||||| || |||||||||||| ||||| |||| ||||||||| ||||||    
T  7918288 cacagacaatgacacgctgacatcactaataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcg 7918211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 44482240 - 44482289
Alignment:
Q  39 ataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| || |||||||||||| ||||| |||| ||||||||||||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 44482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 1815243 - 1815315
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||||| |||||||||||| | |||| |||  |||||||||||||| ||||| |||| | | |||||||||||    
T  1815243 gacactgacacgccgacacaaataattattttaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 1815315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 5944263 - 5944342
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaa--aatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||| |||||||| |||   |||||||| |||||  |||||||||| ||||| |||| ||| ||||||||||||    
T  5944263 cacagacactgacacgccgccacagctaataatttgaaaaaaaatcacataattcagtgtaattataagtgtcggtgtcg 5944342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 7353541 - 7353489
Alignment:
Q  40 taattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaaca 92  Q
    |||||||||||||| |||||| | ||| |||| |||| |||||||||||||||    
T  7353541 taattcgaaaaaattacataatttagtgtaattatatatgtcggtgtcgaaca 7353489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 13436444 - 13436524
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacgt 95  Q
    ||||| |||||||||||||   ||||||||  |  ||||||||||| ||||| |||| |||||||| ||||||| ||||||    
T  13436444 gacacgaacacgccgacactgctaataatttaaggaaatcacataattcagtgtaattatatgtgttggtgtcggacacgt 13436524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 25361881 - 25361945
Alignment:
Q  24 acgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||| | | |||||| || |||||||||||| ||||| |||| ||||||||| ||||||    
T  25361881 acgccgacaccactgataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcg 25361945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 30749860 - 30749904
Alignment:
Q  49 aaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||||    
T  30749860 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 30749904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 30771311 - 30771355
Alignment:
Q  49 aaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||||    
T  30771311 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 30771355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 38503306 - 38503378
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    ||||||||||| |||||||   |||||||| || ||||||| |||  ||||| |||| |||||||||||||||    
T  38503306 gacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgtcggtgtc 38503378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 40181879 - 40181935
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||||| || |||||||||||| ||||| |||| |||||| ||||||||| ||||    
T  40181879 taataatttgagaaaatcacataattcagtgtaattatatgtatcggtgtcggacac 40181935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 7801228 - 7801156
Alignment:
Q  16 acactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||||||||||| | |||||||| ||||||||||||||| ||||  |||| | | ||||||||||||    
T  7801228 acactaacacgccgacacaactaataatttgaaaaaatcacataattcagcgtaattacaagtgtcggtgtcg 7801156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 19044450 - 19044522
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||||| |||||||||||||| |||||||| || || ||||||||| ||||| | || |||||||||||||||    
T  19044450 gacactgacacgccgacacgactaataatttgagaatatcacataattcagtgttattatatgtgtcggtgtc 19044522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 34595127 - 34595199
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||||||| | |||||||| ||||||||||||||| ||||| |||| | | |||||||||||| |||||    
T  34595127 acacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacg 34595199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 5732583 - 5732504
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| ||||||||||||  ||||||||| || |||||||||||  | ||| |||| |||||||||||||||| |||||    
T  5732583 gacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattatatgtgtcggtgtcggacacg 5732504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 16833290 - 16833365
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgt 86  Q
    |||||||||| |||||||||||| | |||||||| ||||||||||||||  ||||| |||| | | ||||||||||    
T  16833290 cacagacactgacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaattacaagtgtcggtgt 16833365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 7265666 - 7265588
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||| ||||||| ||||   |||||||| || |||||||||||| ||||| |||| |||||||||||||||| ||||    
T  7265666 gacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 20371176 - 20371106
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaaca 92  Q
    ||||||||||||   |||||||| || |||||||||||||||| | | || ||||||||||||||||||||    
T  20371176 acacgccgacaccgctaataatttgagaaaatcacataactcaatgtgattatatgtgtcggtgtcgaaca 20371106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 9107443 - 9107370
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||||||||||||   |||||||| |||||||||||| || ||||| |||| | | ||||||||||||    
T  9107443 gacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcg 9107370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 10770747 - 10770674
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||||||| |||| | |||||||| ||||||||||||||| ||||| |||| | | ||||||||||||    
T  10770747 gacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 10770674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 16766683 - 16766756
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||||||||||||   |||||||| ||||||||||||||| ||||| |||| | | ||||||||||||    
T  16766683 gacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 16766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 1681740 - 1681800
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaat 71  Q
    |||| |||||||||||||||||| | |||||||| ||||||||||| ||| ||||| ||||    
T  1681740 cacatacactaacacgccgacacaactaataatttgaaaaaatcacgtaattcagtgtaat 1681800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 12627628 - 12627572
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacac 93  Q
    |||||||  ||||||||||||||| ||||| ||||||||||||||| ||||| ||||    
T  12627628 taataatgtgaaaaaatcacataattcagtgtaataatatgtgtcgatgtcggacac 12627572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 19040345 - 19040417
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    ||||||||||||   |||||||| || |||||||||||| ||||| |||| ||||||||| |||||| |||||    
T  19040345 acacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacg 19040417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 33001355 - 33001283
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    ||||||||||||   |||||||| ||||||||||||||| | | | |||| |||||||||||||||| |||||    
T  33001355 acacgccgacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgtcggacacg 33001283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 426587 - 426508
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| ||||||||||||  ||||||||| ||||||||||||||| | | | |||| | | |||||||||||| |||||    
T  426587 gacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgtcggacacg 426508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 7027227 - 7027302
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaa-aatcacataactcagtctaataatatgtgtcggtgtcga 89  Q
    |||||||| ||||||||||   | |||||| ||||| |||||||||| ||||| |||| |||||||||||||||||    
T  7027227 gacactaatacgccgacacccctgataatttgaaaaaaatcacataattcagtgtaattatatgtgtcggtgtcga 7027302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 8777046 - 8776967
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| |||||||||||| | |||||||| |||||||||||| || ||||| |||| | | |||| ||||||| |||||    
T  8777046 gacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaattacaagtgttggtgtcggacacg 8776967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 9025545 - 9025494
Alignment:
Q  37 taataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||| || |||||||||||| ||||| |||| ||||||||||||||||    
T  9025545 taataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 7930291 - 7930336
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataa 60  Q
    |||||| ||| |||||||| |||||||||| |||||||||||||||    
T  7930291 gacactgacatgccgacacaattaataatttgaaaaaatcacataa 7930336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 8365592 - 8365519
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| |||||||||||| | |||||||| ||||| ||||||||| || || |||| | | ||||||||||||    
T  8365592 gacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagtgtcggtgtcg 8365519  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 9027164 - 9027237
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||| ||||||||||||   |||||||| || | |||||||||| || || |||| ||||||||||||||||    
T  9027164 gacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatatgtgtcggtgtcg 9027237  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 7938102 - 7938174
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||||| ||||||||||||   |||||||| |||||||||| |||| | ||| |||| ||| |||||||||||    
T  7938102 gacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtgtcggtgtc 7938174  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 10842525 - 10842585
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcg 82  Q
    ||||||||||||   |||||||| ||||||||||||||| | ||| |||| ||||||||||    
T  10842525 acacgccgacaccgctaataatttgaaaaaatcacataatttagtgtaatcatatgtgtcg 10842585  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 17341735 - 17341671
Alignment:
Q  17 cactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtc 81  Q
    |||| ||||||||||||  ||||||||| || |||||||||||| ||||| |||| ||| |||||    
T  17341735 cactgacacgccgacaccgttaataatttgataaaatcacataattcagtgtaattataagtgtc 17341671  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 36409577 - 36409506
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||||||| |||||||||| |||||| |||||||| | ||| |||| ||| ||||||||||||||||||    
T  36409577 acacgccgacaccattaataatt-gaaaaagtcacataatttagtgtaattataggtgtcggtgtcgaacacg 36409506  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 36423743 - 36423672
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||||||| |||||||||| |||||| |||||||| | ||| |||| ||| ||||||||||||||||||    
T  36423743 acacgccgacaccattaataatt-gaaaaagtcacataatttagtgtaattataggtgtcggtgtcgaacacg 36423672  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 40179709 - 40179630
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||| |||||  ||||| ||||||| || ||||||||||||||| ||||| |||| ||||| |||||||||| |||||    
T  40179709 gacactgacacgttgacaccattaatagtttgaaaaaatcacataattcagtgtaattatatgcgtcggtgtcggacacg 40179630  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 14126188 - 14126118
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtc 81  Q
    |||||||||||||||||||||||  ||||||||| || ||| |||||||| ||||| |||| ||| |||||    
T  14126188 cacagacactaacacgccgacactgttaataatttgataaagtcacataattcagtgtaattataagtgtc 14126118  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 54580087 - 54580017
Alignment:
Q  24 acgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||| ||||| | |||||||| ||||||||||||||| ||||| |||| ||| |||||||||||| |||||    
T  54580087 acgctgacacaactaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcggacacg 54580017  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 12895340 - 12895268
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||||||| | |||||||| ||||||||||||||| |  || |||| ||| |||||||||||| |||||    
T  12895340 acacgccgacacaaataataatttgaaaaaatcacataattttgtgtaattataagtgtcggtgtcggacacg 12895268  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 23293052 - 23292980
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    ||||||||||||   |||||||| ||||||||||||||| ||||| |||| | | |||||||||||| |||||    
T  23293052 acacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcggacacg 23292980  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 5775418 - 5775359
Alignment:
Q  28 cgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||||| |||||||||| || |||||||||||| | ||| |||| |||||||||||||||    
T  5775418 cgacaccattaataatttgagaaaatcacataattaagtgtaattatatgtgtcggtgtc 5775359  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 19482650 - 19482699
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataa 60  Q
    |||||||||| |||||||||||| | |||||||| ||||| |||||||||    
T  19482650 cacagacactgacacgccgacacaactaataatttgaaaatatcacataa 19482699  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 21945485 - 21945562
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||| ||| ||||||||   |||||||| |||||||| |||||| ||||| |||| | | ||||||||||||    
T  21945485 cacagacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcg 21945562  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 36635310 - 36635375
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgt 80  Q
    |||||| ||||||| |||| | |||||||| || |||||||||||| ||||| |||| ||||||||    
T  36635310 gacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaattatatgtgt 36635375  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 35158058 - 35157986
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||||| |||||||||| | | |||||||| | ||||||||||||| | ||| |||| ||| |||||||||||    
T  35158058 gacactgacacgccgacgcaactaataatttggaaaaatcacataatttagtgtaattataagtgtcggtgtc 35157986  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 135389 - 135312
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    ||||||||| ||||| |||||||   |||||||| || |||||||||||| || || |||| ||||||||||||||||    
T  135389 cacagacaccaacacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtcggtgtcg 135312  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 70260 - 70343
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||||||||  ||| | ||||||  ||||||||| |||||||| |||||| ||||| |||| ||| |||||||||||| |||||    
T  70260 cacagacacagacatgtcgacacagttaataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacacg 70343  T

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Target: scaffold0027 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 46675 - 46742
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcga 89  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||| |||| | |  ||||||||||||    
T  46675 acacgccgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtcggtgtcga 46742  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 28837 - 28907
Alignment:
Q  16 acactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgt 86  Q
    ||||||||||||||||||  |||||||||  | |||||| ||||| ||| | |||| ||||||||||||||    
T  28837 acactaacacgccgacaccgttaataatttaagaaaatcgcataattcaatgtaattatatgtgtcggtgt 28907  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 14523 - 14572
Alignment:
Q  22 acacgccgacacgattaataattcgaaaaaatcacataactcagtctaat 71  Q
    |||||||||||| | |||||||| ||||||||||||||| ||||| ||||    
T  14523 acacgccgacacaactaataatttgaaaaaatcacataattcagtgtaat 14572  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 21029 - 21098
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggt 84  Q
    |||||| ||| || |||||| ||||||||| || |||||||||||| || || |||| ||||||||||||    
T  21029 gacactgacatgctgacacggttaataatttgagaaaatcacataagtcggtataattatatgtgtcggt 21098  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 3926 - 3849
Alignment:
Q  11 cacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcg 88  Q
    |||||||||| | | ||||||||| |||||||||  |||||||||||||| ||||| |||| | | ||||| ||||||    
T  3926 cacagacactgatatgccgacacggttaataatttaaaaaaatcacataattcagtgtaattacaagtgtcagtgtcg 3849  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 540 - 456
Alignment:
Q  10 ccacagacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtcgaacacg 94  Q
    |||| |||||| | ||||||||||   |||||||| |||||||||||| || ||||| |||| | | |||||||||||| |||||    
T  540 ccacggacactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacg 456  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 51797 - 51853
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaat 71  Q
    |||||| ||||||||||||   |||||||| ||||||||||||||| ||||| ||||    
T  51797 gacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaat 51853  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 17822 - 17750
Alignment:
Q  15 gacactaacacgccgacacgattaataattcgaaaaaatcacataactcagtctaataatatgtgtcggtgtc 87  Q
    |||| |||||||| ||||| | |||||||| ||||||||||||||| | ||| |||| | | |||||||||||    
T  17822 gacaataacacgctgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 17750  T

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