View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3685_low_1 (Length: 693)
Name: NF3685_low_1
Description: NF3685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3685_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 14 - 682
Target Start/End: Complemental strand, 30655335 - 30654658
Alignment:
| Q |
14 |
ataacaataataccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcaacaaaaaatccaccttta |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
30655335 |
ataacaataacaccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcagcaaaaactccaccttta |
30655236 |
T |
|
| Q |
114 |
aaaccccttaagagctaataccacccaaaagatgcaaccaccaca------cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30655235 |
aaaccccttaagagctaataccacccaaaagatgcaaccaccactaccacgcccaagcaaacacctataacacttcaccaccactctttcaagccaccgt |
30655136 |
T |
|
| Q |
208 |
aacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaacagatccnnnnnnncgtatatcagcacctct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||| |
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| T |
30655135 |
aacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaaaagatccaaaaaaacgtatattaacacctct |
30655036 |
T |
|
| Q |
308 |
attcctgttcccatcccttttacaaaacactaccaccaacaaaagcccctgagcattgtcggagacgtgaaaccacggcggtgccattcccgcacaacca |
407 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30655035 |
gttcctcttcccatcccttttacaaaacactaccaccaacaacagcccctgagcattgtcggagacgtgaaaccacggcggtgccattccagcacaacca |
30654936 |
T |
|
| Q |
408 |
aacagctacaaacgcaacaacaacaaagt---tgtttgcacaggaccaacacaccaaccgaccaccgcggcgacgcctacagtgggtttgaggactttct |
504 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||| ||| || ||| |||||||||||||| |
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| T |
30654935 |
aacagctacaaacgcaacaacaacaacaacaatgtttgcaaaggaccaaaacaacaaccgaccaccgcggcgatgccgactatggttttgaggactttct |
30654836 |
T |
|
| Q |
505 |
acgaacccacttaaattgtgcatgagctttaccgaagcagaagctagcgaccggagcgagcatctaaacacgcagatctgaacttggactggaacccacg |
604 |
Q |
| |
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| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30654835 |
atgaacccacttaaaccgtgcatgagctttaccgaagcagaagctagcggccgaagcgagcatctaaacacgcagatctgaacttggactggaacccacg |
30654736 |
T |
|
| Q |
605 |
aaccggcaaaccacaaagcaacgacaaccttagaaagagcggcagagaaacgttaggaaatcaaacataggtcgcaaa |
682 |
Q |
| |
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|||| |||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30654735 |
aaccagcaaaccacaaagcaatggtaaccttagaaagagcggcagagaaacgttaagaaatcaaacataggtcgcaaa |
30654658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 159 - 444
Target Start/End: Complemental strand, 38929003 - 38928719
Alignment:
| Q |
159 |
cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgtaacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcc |
258 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||| |
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| T |
38929003 |
cccaagcaaacacctataacacttcaccatcgctctttcaagccaccataacaaccccaaaacaccgtacaaaacctcacatcaacacccataagtctcc |
38928904 |
T |
|
| Q |
259 |
caagaccatccaccaaaacagatccnnnnnnncgtatatcagcacctctattcctgttcccatcccttttacaaaacactaccaccaacaaaagcccctg |
358 |
Q |
| |
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||||||| |||||||||||| |||| || ||| || ||||| | ||||| ||||||||| ||||||||||||||||| | | |||||||| | | |
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| T |
38928903 |
caagaccctccaccaaaacaaatcc-aaaaaacgaatagcaacacctatgttcctcttcccatcctttttacaaaacactacccctagcaaaagccacag |
38928805 |
T |
|
| Q |
359 |
agcattgtcggagacgtgaaaccacggcggtgccattcccgcacaaccaaacagctacaaacgcaacaacaacaaagttgtttgca |
444 |
Q |
| |
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| |||||||||| ||| |||||||||||||||||| | |||||||||||| | ||||||||||||||||| ||| |||||||| |
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| T |
38928804 |
accattgtcggacacgctaaaccacggcggtgccatccaaacacaaccaaacaacaacaaacgcaacaacaaccaaggtgtttgca |
38928719 |
T |
|
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