View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3685_low_2 (Length: 639)
Name: NF3685_low_2
Description: NF3685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3685_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 169 - 623
Target Start/End: Original strand, 6705277 - 6705731
Alignment:
| Q |
169 |
tcacttacttgattctaagatagttcttaggtatttgtggcaagaatggttctttcaatctgcattatatttttgaaaatccaagtgaatattcatcaca |
268 |
Q |
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| T |
6705277 |
tcacttacttaattctaagatagttcttaggtatttgtggcaagaatggttctttcaatctgcattatattattgaaaatccaagtgaatattcatcaca |
6705376 |
T |
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| Q |
269 |
aaaactaattaaattgcactagcttaaaatagttgacatgaatcatatataaataaatgttatatataagtgtnnnnnnnttaatgttagcttactgatt |
368 |
Q |
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| T |
6705377 |
aaaactaattaaattgcactagcttaaaatagttgacatgaatcatatataaatatatgttatatataagggtaaaaaaattaatgttagcttactgatt |
6705476 |
T |
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| Q |
369 |
ttgtgaggcttgtagcataaaccaaattccagaatgaggtctacgaggaggatcgacaactcgaaaagcgacgttagatgatgagctaggaccggccaca |
468 |
Q |
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| T |
6705477 |
ttgtgaggcttgtagcataaaccaaattccagaatgaggtctacgaggaggatcgacaactcgaaaagcgacgttagatgatgagctaggaccggccaca |
6705576 |
T |
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| Q |
469 |
tcaaattgatcaaatccagaagatgaagaagatgaaggaaagtgaaagggtgatgcatgatgatattgaggataataattaggtcctaaagatggcctta |
568 |
Q |
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| T |
6705577 |
tcaaattgatcaaatccagaagatgaagaagatgaaggaaagtgaaagggtgatgcatgatgatattgaggataataattaggtcctaaagatggcctta |
6705676 |
T |
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| Q |
569 |
aagaagaacaagattgtgataaagaagaagatggaacataagctgtagaagaagg |
623 |
Q |
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| T |
6705677 |
aagaagaacaagattgtgataaagaagaagatggaatataagatgtagaagaagg |
6705731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 6705161 - 6705200
Alignment:
| Q |
52 |
agtgaacgacattgattacacactgacaagactttaaacc |
91 |
Q |
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| T |
6705161 |
agtgaacgacattgattacacactgacaagactttaaacc |
6705200 |
T |
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