View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3685_low_3 (Length: 437)

Name: NF3685_low_3
Description: NF3685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3685_low_3
NF3685_low_3
[»] chr2 (23 HSPs)
chr2 (13-422)||(43811075-43811484)
chr2 (236-345)||(15120225-15120334)
chr2 (277-374)||(34651996-34652094)
chr2 (256-338)||(38388736-38388818)
chr2 (260-345)||(787374-787459)
chr2 (300-374)||(11488289-11488362)
chr2 (277-340)||(11344730-11344793)
chr2 (300-374)||(28933836-28933910)
chr2 (258-341)||(32614889-32614972)
chr2 (301-374)||(32821821-32821895)
chr2 (300-372)||(1647250-1647323)
chr2 (233-345)||(11513940-11514050)
chr2 (236-345)||(15370242-15370351)
chr2 (301-345)||(2226984-2227028)
chr2 (238-333)||(28803451-28803546)
chr2 (236-318)||(22878167-22878249)
chr2 (280-343)||(33942194-33942259)
chr2 (300-368)||(40672793-40672862)
chr2 (273-333)||(1801722-1801782)
chr2 (286-338)||(4550796-4550848)
chr2 (276-344)||(5902508-5902576)
chr2 (273-345)||(8820248-8820320)
chr2 (273-345)||(39621993-39622065)
[»] chr4 (16 HSPs)
chr4 (15-217)||(3549927-3550129)
chr4 (237-345)||(4691890-4691998)
chr4 (273-374)||(2996585-2996687)
chr4 (273-374)||(24370907-24371011)
chr4 (276-367)||(20936188-20936280)
chr4 (290-374)||(37863927-37864011)
chr4 (236-323)||(27123271-27123358)
chr4 (301-362)||(24929517-24929579)
chr4 (307-345)||(30631998-30632036)
chr4 (236-329)||(10172120-10172213)
chr4 (314-374)||(11802546-11802607)
chr4 (300-372)||(28614791-28614864)
chr4 (280-345)||(45128273-45128338)
chr4 (273-361)||(4071904-4071992)
chr4 (277-341)||(21043195-21043259)
chr4 (300-367)||(29467607-29467675)
[»] chr5 (24 HSPs)
chr5 (258-374)||(37611156-37611273)
chr5 (258-374)||(37787886-37788003)
chr5 (236-374)||(17368688-17368823)
chr5 (273-345)||(29336672-29336744)
chr5 (275-345)||(12595674-12595744)
chr5 (273-369)||(28586722-28586819)
chr5 (241-345)||(8089978-8090082)
chr5 (274-345)||(10125675-10125746)
chr5 (277-374)||(32059318-32059417)
chr5 (258-345)||(32172695-32172782)
chr5 (300-374)||(37794681-37794755)
chr5 (233-311)||(11104981-11105059)
chr5 (279-345)||(37526161-37526227)
chr5 (279-345)||(37690598-37690664)
chr5 (300-345)||(7674690-7674735)
chr5 (290-374)||(12242683-12242768)
chr5 (301-358)||(13264089-13264146)
chr5 (333-374)||(18543213-18543254)
chr5 (301-341)||(11700362-11700402)
chr5 (300-372)||(18700399-18700471)
chr5 (307-374)||(28413274-28413342)
chr5 (300-340)||(34205288-34205328)
chr5 (315-374)||(36638759-36638819)
chr5 (279-374)||(37588322-37588418)
[»] chr3 (18 HSPs)
chr3 (275-374)||(36646340-36646440)
chr3 (273-374)||(30573870-30573972)
chr3 (288-367)||(31010421-31010501)
chr3 (299-350)||(50004689-50004740)
chr3 (273-374)||(37273146-37273248)
chr3 (302-374)||(30923883-30923956)
chr3 (275-374)||(14548679-14548779)
chr3 (273-345)||(27294388-27294460)
chr3 (289-345)||(41724254-41724310)
chr3 (259-331)||(44014740-44014812)
chr3 (273-374)||(2152134-2152236)
chr3 (277-374)||(41452535-41452633)
chr3 (235-317)||(50211805-50211887)
chr3 (261-338)||(2304215-2304292)
chr3 (258-374)||(41644386-41644503)
chr3 (238-358)||(20194954-20195074)
chr3 (277-345)||(31710847-31710915)
chr3 (277-345)||(31711102-31711170)
[»] scaffold0003 (1 HSPs)
scaffold0003 (300-374)||(306338-306413)
[»] chr6 (14 HSPs)
chr6 (300-374)||(30523671-30523746)
chr6 (276-339)||(33737618-33737681)
chr6 (277-374)||(281808-281906)
chr6 (288-373)||(34939526-34939612)
chr6 (300-371)||(4420658-4420730)
chr6 (275-374)||(31686321-31686421)
chr6 (300-374)||(2117415-2117490)
chr6 (236-323)||(2460070-2460157)
chr6 (259-350)||(3738106-3738197)
chr6 (273-340)||(27595523-27595590)
chr6 (277-340)||(27693399-27693462)
chr6 (276-338)||(32917246-32917308)
chr6 (303-374)||(6647399-6647471)
chr6 (279-374)||(34939756-34939852)
[»] chr7 (18 HSPs)
chr7 (258-367)||(3610681-3610791)
chr7 (273-350)||(36598312-36598389)
chr7 (273-345)||(25670542-25670614)
chr7 (276-344)||(36537951-36538019)
chr7 (273-345)||(48157076-48157148)
chr7 (236-353)||(23214888-23215006)
chr7 (301-372)||(9423578-9423650)
chr7 (236-374)||(24363519-24363659)
chr7 (258-372)||(28165105-28165220)
chr7 (273-371)||(33894642-33894741)
chr7 (307-345)||(11048069-11048107)
chr7 (300-369)||(12234872-12234942)
chr7 (300-345)||(19719048-19719093)
chr7 (303-374)||(7244692-7244764)
chr7 (278-338)||(27626084-27626144)
chr7 (300-340)||(29290380-29290420)
chr7 (305-345)||(39539769-39539809)
chr7 (273-345)||(44808200-44808272)
[»] chr8 (21 HSPs)
chr8 (300-373)||(2458549-2458623)
chr8 (279-374)||(14949878-14949974)
chr8 (276-374)||(11569416-11569515)
chr8 (263-345)||(31875541-31875623)
chr8 (286-374)||(8060681-8060770)
chr8 (236-345)||(43368619-43368728)
chr8 (259-331)||(16162816-16162888)
chr8 (313-372)||(20672764-20672824)
chr8 (236-379)||(26479792-26479936)
chr8 (273-345)||(30191097-30191169)
chr8 (320-374)||(30277248-30277303)
chr8 (307-372)||(3254239-3254305)
chr8 (281-374)||(42215270-42215364)
chr8 (236-317)||(7918701-7918781)
chr8 (279-340)||(8629503-8629564)
chr8 (236-345)||(9700043-9700152)
chr8 (326-374)||(31862505-31862554)
chr8 (280-345)||(41442416-41442481)
chr8 (273-345)||(2487964-2488036)
chr8 (273-317)||(27779468-27779512)
chr8 (249-345)||(43504793-43504889)
[»] scaffold0147 (1 HSPs)
scaffold0147 (298-370)||(12685-12758)
[»] chr1 (21 HSPs)
chr1 (236-345)||(33723301-33723410)
chr1 (239-374)||(10199330-10199466)
chr1 (273-345)||(31517696-31517768)
chr1 (236-374)||(26461860-26461999)
chr1 (273-374)||(4699571-4699673)
chr1 (237-343)||(6659724-6659830)
chr1 (306-371)||(3223683-3223748)
chr1 (284-345)||(4481972-4482033)
chr1 (272-342)||(17628644-17628710)
chr1 (276-345)||(37593643-37593712)
chr1 (258-345)||(29723531-29723618)
chr1 (306-345)||(42397767-42397806)
chr1 (307-345)||(3070080-3070118)
chr1 (300-373)||(35925703-35925777)
chr1 (279-345)||(37811894-37811960)
chr1 (277-338)||(6976973-6977034)
chr1 (314-374)||(25479593-25479654)
chr1 (259-374)||(32515383-32515499)
chr1 (258-318)||(37272535-37272595)
chr1 (276-344)||(38170649-38170717)
chr1 (277-345)||(43954006-43954073)
[»] scaffold0608 (1 HSPs)
scaffold0608 (284-345)||(9604-9665)
[»] scaffold0311 (1 HSPs)
scaffold0311 (277-345)||(10577-10645)


Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 43811484 - 43811075
Alignment:
Q  13 aaaattgaagcatcaatagtgatttggaagcggaaaatgaaccaaaaagataacaaatctgcttggggttctgctgtaagtttggaaaaaagagagctct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43811484 aaaattgaagcatcaatagtgatttggaagcggaaaatgaaccaaaaagataacaaatctgcttggggttctgctgtaagtttggaaaaaagagagctct 43811385  T
Q  113 ttgaagagagagcggaaaccatcttacttctaataaagcaccgattccctggcattcctcaatcttcattggatataagcaaaatccaattcaacagggt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43811384 ttgaagagagagcggaaaccatcttacttctaataaagcaccgattccctggcattcctcaatcttcattggatataagcaaaatccaattcaacagggt 43811285  T
Q  213 aagaacattaaatgataaatgattgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaa 312  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43811284 aagaacattaaatggtaaatgattgtttggattgatttatttaatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaa 43811185  T
Q  313 cttatggcatggtcataagctgttttcagcttagttcataacctctctaggatagcttatgacaattcactttatatttttgttatataaagagcttatc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43811184 cttatggcatggtcataagctgttttcagcttagttcataacctctctaggatagcttatgacaattcactttatatttttgttatataaagagcttatc 43811085  T
Q  413 tgtaagtact 422  Q
    ||||||||||    
T  43811084 tgtaagtact 43811075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 15120334 - 15120225
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgt 335  Q
    |||||||||||| |||| | | |||||||||||||  || || ||||||  ||||||| || | ||||||||||||||||||| |||| |||| ||||||    
T  15120334 tgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcattagctgt 15120235  T
Q  336 tttcagctta 345  Q
    ||| ||||||    
T  15120234 tttaagctta 15120225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 34651996 - 34652094
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||||||| || ||| |||||| ||||| ||||||||||||| ||||  ||||||||||||||| |||| || ||||| ||||| | ||||||||||||    
T  34651996 acttgtgagacggttggagaaagcttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatga 34652094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 38388818 - 38388736
Alignment:
Q  256 atcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgtttt 338  Q
    |||||||||||||||| |||||||||||  || ||||| || | ||||||| ||||||||||| |||| |||||| |||||||    
T  38388818 atcttatctactagcttaagcacttgtgtgaccgtttgggagaacttatggtaacaacttatgacatgttcataaactgtttt 38388736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 787459 - 787374
Alignment:
Q  260 tatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||| ||  |||||||||||| |||||||| || | |||||| ||||| |||||| ||||  ||||||||||||||||||||    
T  787459 tatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgttttcagctta 787374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 11488362 - 11488289
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||||| ||||||||||||  ||||||||||| ||||||||||||| || ||||| ||||| ||||||||||||||    
T  11488362 cttatgaaaacaacttatg--atggtcataagttgttttcagcttatttgcataatctctccaggatagcttatga 11488289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 11344730 - 11344793
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttca 340  Q
    |||||||| ||||||||| | ||||||||||||||||||||| ||||  ||||| |||||||||    
T  11344730 acttgtgaaactgtttgacagaccttatggaaacaacttatgacatgtccataaactgttttca 11344793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 28933910 - 28933836
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    |||||| ||||||||||||||||| |||| ||||||||||| |||| ||| || | ||||||||||||||||||||    
T  28933910 cttatgaaaacaacttatggcatgttcat-agctgttttcaacttatttctatcagctctctaggatagcttatga 28933836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 32614889 - 32614972
Alignment:
Q  258 cttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcag 341  Q
    ||||||||||||| |||||||||||||||| || | ||| | |||||  |||||||||||| |||| ||||| | |||||||||    
T  32614889 cttatctactagcacaagcacttgtgatacagtgtaagagaacttataaaaacaacttatgacatgttcatatgttgttttcag 32614972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 32821895 - 32821821
Alignment:
Q  301 ttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    |||| ||||||||||||| ||||  |||||||||||||||| ||| ||| |||| |||| |||||||||||||||    
T  32821895 ttatagaaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatga 32821821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 1647323 - 1647250
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttat 372  Q
    |||||| ||||| |||||| |||| ||||||||||||||||||||| || ||||| |||||||  |||||||||    
T  1647323 cttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctctctataatagcttat 1647250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 345
Target Start/End: Complemental strand, 11514050 - 11513940
Alignment:
Q  233 gattgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagc 332  Q
    |||||||||||||| ||||| | |  ||||||||||||  |||||||||||| ||||||| ||| | |||||| ||||| |  ||||||||   ||||||    
T  11514050 gattgtttggattggtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttatgaaaacagc--atggcatgcctataagc 11513953  T
Q  333 tgttttcagctta 345  Q
    | |||||||||||    
T  11513952 tattttcagctta 11513940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 15370242 - 15370351
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgt 335  Q
    |||||||||||| |||| | | |||||||||| ||  ||||| |||||| |||||||| || |  |||||| ||||||||| |||||| |||||||| ||    
T  15370242 tgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttgggacattttatggtaacaacttacggcatgttcataagccgt 15370341  T
Q  336 tttcagctta 345  Q
    |  |||||||    
T  15370342 taacagctta 15370351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 2226984 - 2227028
Alignment:
Q  301 ttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||    
T  2226984 ttatggaaacaacttatggcatgttcattagctattttcagctta 2227028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 28803451 - 28803546
Alignment:
Q  238 tttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagct 333  Q
    |||||||||| |||| | | |||||||||  ||  |||||| ||||| ||||||||||| | | ||||||||||||||||| ||||  ||||||||    
T  28803451 tttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatgtccataagct 28803546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 22878249 - 22878167
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatg 318  Q
    |||||||||||| |||| | | |||||| |||  |  |||||||||||| |||||||| || ||||||||||||||| |||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaacaaattatg 22878167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 33942259 - 33942194
Alignment:
Q  280 tgtgatactgtttgagaaaccttatggaaa--caacttatggcatggtcataagctgttttcagct 343  Q
    ||||| ||||||||||| | |||||||| |  ||||||||| |||| |||||||||||||||||||    
T  33942259 tgtgagactgtttgagagagcttatggagagacaacttatgacatgttcataagctgttttcagct 33942194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 40672793 - 40672862
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagctta-gttcataacctctctaggatagc 368  Q
    ||||||||||||||| |||||||| |||||| |||||||||  |||  ||||||| |||||||| |||||    
T  40672793 cttatggaaacaactcatggcatgatcataaactgttttcactttattttcataagctctctagtatagc 40672862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 1801782 - 1801722
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagct 333  Q
    |||||||||||||| |||||| || | |||||| ||||| |||||| |||| |||||||||    
T  1801782 aagcacttgtgatattgtttgggagaacttatgaaaacagcttatgacatgttcataagct 1801722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 4550848 - 4550796
Alignment:
Q  286 actgtttgagaaaccttatggaaacaacttatggcatggtcataagctgtttt 338  Q
    |||||||| || | ||||||||||||||||||| |||| ||||||||| ||||    
T  4550848 actgtttgggagagcttatggaaacaacttatgacatgttcataagctatttt 4550796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 5902508 - 5902576
Alignment:
Q  276 cacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctt 344  Q
    ||||||||| ||||||||  | | |||||| ||||| |||||| |||| |||||| |||||||||||||    
T  5902508 cacttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataaactgttttcagctt 5902576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 8820248 - 8820320
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||  || |||| || ||| |||||||||||||| ||| || |||| ||| |||||||||||||||||    
T  8820248 aagcactttcgagactgcttaagagaccttatggaaacagcttctgacatgttcacaagctgttttcagctta 8820320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 39622065 - 39621993
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||| || ||||||||||| | |||||| |||||||||||| ||   ||||||  |||||||||||||    
T  39622065 aagcacttgcgacactgtttgagagaacttatgaaaacaacttatgacaaattcataaattgttttcagctta 39621993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 3549927 - 3550129
Alignment:
Q  15 aattgaagcatcaatagtgatttggaagcggaaaatgaaccaaaaagataacaaatctgcttggggttctgctgtaagtttggaaaaaagagagctcttt 114  Q
    |||||| ||||||||||||||||||| | |||| |||||||||||||||  |||||| || |||||||||||||| |||||||| |||||||||||||||    
T  3549927 aattgaggcatcaatagtgatttggaggaggaagatgaaccaaaaagattccaaatcagcatggggttctgctgtgagtttggagaaaagagagctcttt 3550026  T
Q  115 gaagagagagcggaaaccatcttacttctaataaagcaccgattccctggcattcctcaatcttcattggatataagcaaaatccaattcaacagggtaa 214  Q
    ||||||||||| |||||||||||||||||  | || || || || |||||  |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  3550027 gaagagagagcagaaaccatcttacttctcttgaaacatcggtttcctggacttccacaatcttcattggatataagcaaaatccaattcaacggggtaa 3550126  T
Q  215 gaa 217  Q
    |||    
T  3550127 gaa 3550129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 4691998 - 4691890
Alignment:
Q  237 gtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgtt 336  Q
    |||||| ||||||||| | | ||||||||||  | ||| ||||||||| ||| ||||||||| ||||||||||||||||||| ||||  |||| | ||||    
T  4691998 gtttggtttgatttatttgagcttatctactgtcacaatcacttgtgagactatttgagaaaacttatggaaacaacttatgacatgcccatatgttgtt 4691899  T
Q  337 ttcagctta 345  Q
    |||||||||    
T  4691898 ttcagctta 4691890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 374
Target Start/End: Complemental strand, 2996687 - 2996585
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta-gttcataacctctctaggatagctta 371  Q
    |||||||| ||| ||||||||||| | |||||| |||||||||||| ||||  |||||||| |||||| ||||  ||||||  ||||| | |||||||||    
T  2996687 aagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagctta 2996588  T
Q  372 tga 374  Q
    |||    
T  2996587 tga 2996585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 24370907 - 24371011
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatg--gtcataagctgttttcagcttagttc-ataacctctctaggatagct 369  Q
    |||||| ||||| | ||||||| ||| ||||||||||||||||||| ||||    ||||||| |||||||||||| ||| |||| || | ||||||||||    
T  24370907 aagcacatgtgagaatgtttgataaaacttatggaaacaacttatgacatgtatacataagccgttttcagcttatttctataaactatttaggatagct 24371006  T
Q  370 tatga 374  Q
    |||||    
T  24371007 tatga 24371011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 367
Target Start/End: Original strand, 20936188 - 20936280
Alignment:
Q  276 cacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatag 367  Q
    ||||||||| |||||||   ||| |||||| ||||||||||||  ||| |||||||||||||||| |||| || ||||| ||||| |||||||    
T  20936188 cacttgtgacactgtttcgtaaaacttatgaaaacaacttatgatatgttcataagctgttttcaccttatttccataatctctccaggatag 20936280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 37863927 - 37864011
Alignment:
Q  290 tttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttcataacctctctaggatagcttatga 374  Q
    ||||||| | |||||| ||||| |||||| || | ||||||| |||||||| |||| ||||||||||| | | ||||||||||||    
T  37863927 tttgagagaacttatgaaaacagcttatgacacgttcataagttgttttcaccttaattcataacctcaccaagatagcttatga 37864011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 27123271 - 27123358
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatg 323  Q
    |||||||||| | |||| | | |||||  ||||||  ||| |||||||| ||||||||||| | ||||||||||||||||||| ||||    
T  27123271 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatg 27123358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 24929579 - 24929517
Alignment:
Q  301 ttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctag 362  Q
    ||||||||||| ||||||||||| ||||||  ||||||||||||| || ||||| ||||||||    
T  24929579 ttatggaaacagcttatggcatgttcataaattgttttcagcttatttccataagctctctag 24929517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 30632036 - 30631998
Alignment:
Q  307 aaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  30632036 aaacaacttatggcatgttcataagctgttttaagctta 30631998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 10172213 - 10172120
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcata 329  Q
    ||||||||||||||||| | | ||||||||   ||  |||||||||||| ||||||||| | | |||||||||||| ||| || |||| |||||    
T  10172213 tgtttggattgatttatttgagcttatctatatgcataagcacttgtgaaactgtttgatatagcttatggaaacagcttgtgacatgttcata 10172120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 11802607 - 11802546
Alignment:
Q  314 ttatggcatggtcataagctgttttcagcttagt-tcataacctctctaggatagcttatga 374  Q
    ||||||||||| |||||||||||||||||||| | |||||| ||||| |  |||||||||||    
T  11802607 ttatggcatggccataagctgttttcagcttattctcataagctctccataatagcttatga 11802546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 28614791 - 28614864
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagctta-gttcataacctctctaggatagcttat 372  Q
    ||||||||||||| ||||| |||   |||||||| |||||||||||  |||||||  |||||||||||||||||    
T  28614791 cttatggaaacaatttatgacatatccataagctcttttcagcttattttcataagttctctaggatagcttat 28614864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 45128273 - 45128338
Alignment:
Q  280 tgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||| ||||||||| | ||||||||||||||| ||  ||||  ||| ||||||||||||||||    
T  45128273 tgtgatattgtttgagagagcttatggaaacaactgatatcatgtccatgagctgttttcagctta 45128338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 4071992 - 4071904
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttcataacctctcta 361  Q
    |||||||||||| ||||||||||| | |||||| ||||| ||||||   || |  |||| |||||||||||| || ||||| |||||||    
T  4071992 aagcacttgtgagactgtttgagagagcttatgaaaacagcttatgatttgttggtaagttgttttcagctttgtccataagctctcta 4071904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 21043195 - 21043259
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcag 341  Q
    |||||||| |||||||| || |  ||||||||||| |||||| || | |||||||||||||||||    
T  21043195 acttgtgagactgtttgggagaggttatggaaacagcttatgacacgttcataagctgttttcag 21043259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 29467607 - 29467675
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatag 367  Q
    ||||| |||||  |||||| ||||  |||||||||||||||||||| || ||||| |||||||||||||    
T  29467607 cttatagaaacggcttatgacatgtccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 37611156 - 37611273
Alignment:
Q  258 cttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacct 356  Q
    |||||||||| || |||| |||||||| | ||||||||| | |||||| ||||||||| || |||| ||||||||||||||||| ||| || ||||| ||    
T  37611156 cttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagct 37611255  T
Q  357 ctctaggatagcttatga 374  Q
    ||| | ||||||||||||    
T  37611256 ctccaagatagcttatga 37611273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 37787886 - 37788003
Alignment:
Q  258 cttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacct 356  Q
    |||||||||| || |||| |||||||| | ||||||||| | |||||| ||||||||| || |||| ||||||||||||||||| ||| || ||||| ||    
T  37787886 cttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagct 37787985  T
Q  357 ctctaggatagcttatga 374  Q
    ||| | ||||||||||||    
T  37787986 ctccaagatagcttatga 37788003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 374
Target Start/End: Complemental strand, 17368823 - 17368688
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgt 335  Q
    |||||||||||| |||| ||| |||||||||| ||  |||||||||||| || |    ||| | |||||| |||||||||||| |||| ||||| || ||    
T  17368823 tgtttggattgacttatttaaacttatctactggcataagcacttgtgacaccg----agagaacttatgaaaacaacttatgacatgttcatatgcagt 17368728  T
Q  336 tttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||||||||| || ||||||||||| | ||||||||||||    
T  17368727 tttcagcttatttccataacctctccaagatagcttatga 17368688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 29336744 - 29336672
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||||| |||| |||||| | |||||||||||||||||||||||   |||||  |||||||||||||    
T  29336744 aagcacttgtgagactgattgagagagcttatggaaacaacttatggcatacccataaaatgttttcagctta 29336672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 12595674 - 12595744
Alignment:
Q  275 gcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||| ||| ||||||| | |||| ||||||| ||||| ||||| |||||||| ||||||||||||    
T  12595674 gcacttgtgagactatttgagagagcttaaggaaacagcttattgcatgttcataagccgttttcagctta 12595744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 369
Target Start/End: Original strand, 28586722 - 28586819
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagct 369  Q
    ||||| |||||| |||||||| || | |||||||||| | |||||| |||   | |||||||||||||||||| ||| |||| |||||||||||||||    
T  28586722 aagcatttgtgaaactgtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagctctctaggatagct 28586819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 8090082 - 8089978
Alignment:
Q  241 ggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttca 340  Q
    ||||||| |||| | | ||||||||||| | |||||||| | || ||| ||||||| | |||||| ||||||||||||  ||  || |||||||||||||    
T  8090082 ggattgacttatttgaacttatctactaacacaagcactcgcgagactatttgagagagcttatgaaaacaacttatgatatattcctaagctgttttca 8089983  T
Q  341 gctta 345  Q
    |||||    
T  8089982 gctta 8089978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 10125675 - 10125746
Alignment:
Q  274 agcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||||| | ||| ||||| | |||||| |||||||||||| |||| | ||||| |||||||||||||    
T  10125675 agcacttgtgacattgtctgagagaacttatgtaaacaacttatgacatgttgataaggtgttttcagctta 10125746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 32059318 - 32059417
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttat-ggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    |||||||||||| ||||||| |  |||| |||||| ||||  |||||| |||| || ||||||||||||| ||| ||||  |||||||||||||||||||    
T  32059318 acttgtgatactatttgagagagtttatcgaaacagcttaacggcatgttcatgagttgttttcagcttatttcgataagttctctaggatagcttatga 32059417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 345
Target Start/End: Complemental strand, 32172782 - 32172695
Alignment:
Q  258 cttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||| |||||||  |||||||||||| |  ||||| || | ||||||||||||||||||| ||||  |||||||  |||||||||||    
T  32172782 cttatatactagcataagcacttgtgagatagtttgggagagcttatggaaacaacttatgacatgtccataagccattttcagctta 32172695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 37794681 - 37794755
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    |||||| |||||||||||| |||| |||||||||||||| |||||| ||| |||| |||| |||||||||| ||||    
T  37794681 cttatgaaaacaacttatgacatgttcataagctgttttgagcttatttcgataa-ctctataggatagctcatga 37794755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 11105059 - 11104981
Alignment:
Q  233 gattgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaaca 311  Q
    |||||||||||||||||||| | | |||||| || |||  |||||||||||||||| |||| || | |||||| |||||    
T  11105059 gattgtttggattgatttatttgagcttatcaaccagcataagcacttgtgatactatttgggagaacttatgaaaaca 11104981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 37526161 - 37526227
Alignment:
Q  279 ttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||| ||||||||||| | |||||| | ||||| |||| |||| | |||||||||||||||||||    
T  37526161 ttgtgagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagctta 37526227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 37690598 - 37690664
Alignment:
Q  279 ttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||| ||||||||||| | |||||| | ||||| |||| |||| | |||||||||||||||||||    
T  37690598 ttgtgagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagctta 37690664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 7674735 - 7674690
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||||||||||||| |||| | ||||| |||||||||||||    
T  7674735 cttatggaaacaacttatgacatgtttataaggtgttttcagctta 7674690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 12242683 - 12242768
Alignment:
Q  290 tttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    ||||||| | |||||||||| |||||||| ||||  ||| || ||||||||||||| || ||||| ||||| | ||||||||||||    
T  12242683 tttgagagagcttatggaaaaaacttatgacatgaacattagttgttttcagcttacttccataagctctccaagatagcttatga 12242768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 13264089 - 13264146
Alignment:
Q  301 ttatggaaacaacttatggcatggtcataagctgttttcagcttagttcataacctct 358  Q
    ||||||||||| |||||| |||  ||||||||||||||||||||| || |||| ||||    
T  13264089 ttatggaaacagcttatgccatattcataagctgttttcagcttattttataagctct 13264146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 18543213 - 18543254
Alignment:
Q  333 tgttttcagcttagttcataacctctctaggatagcttatga 374  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||    
T  18543213 tgttttcagcttatttcataagctctccaggatagcttatga 18543254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 11700362 - 11700402
Alignment:
Q  301 ttatggaaacaacttatggcatggtcataagctgttttcag 341  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  11700362 ttatggaaacaacttatgacatgtccataagctgttttcag 11700402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 18700471 - 18700399
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagttcataacctctctaggatagcttat 372  Q
    ||||||||||||||||||| ||||   ||||| ||||||||||||  | ||||| || || ||||||||||||    
T  18700471 cttatggaaacaacttatgacatgtctataagttgttttcagctttatccataagctttcaaggatagcttat 18700399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 28413274 - 28413342
Alignment:
Q  307 aaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    ||||| ||||||| ||| ||||||||||||||||||||| || ||||| ||||| | |||| |||||||    
T  28413274 aaacagcttatggaatgttcataagctgttttcagcttatttccataaactctccaagataacttatga 28413342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 34205328 - 34205288
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttca 340  Q
    ||||||||||||||||||| |||| ||||||| ||||||||    
T  34205328 cttatggaaacaacttatgtcatgttcataagttgttttca 34205288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 374
Target Start/End: Complemental strand, 36638819 - 36638759
Alignment:
Q  315 tatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||| |||| ||||||||| ||||||||||| || ||||| |||||||||||| |||||||    
T  36638819 tatgacatgttcataagcttttttcagcttatttccataagctctctaggataacttatga 36638759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 37588322 - 37588418
Alignment:
Q  279 ttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||||| ||||||||||| | |||||| | ||||| ||||  ||| | ||||||||||||||||||| || ||||| ||||| || ||| |||||||    
T  37588322 ttgtgagactgtttgagagagcttatgaatacaacctatgaaatgttaataagctgttttcagcttatttccataagctctccagaataacttatga 37588418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 36646340 - 36646440
Alignment:
Q  275 gcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatg 373  Q
    |||||||| | ||| |||| || | ||||||||||| ||||||||||||  ||||||||||||||| |||| ||| |||| |||||||||||||||||||    
T  36646340 gcacttgtaagactatttgggagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatg 36646439  T
Q  374 a 374  Q
    |    
T  36646440 a 36646440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 30573870 - 30573972
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta-gttcataacctctctaggatagctta 371  Q
    ||||||||||||   |||||| || | |||||| |||||| |||||||||| ||||||||||||||||||||| |||||| | ||||| | |||||||||    
T  30573870 aagcacttgtgagtttgtttgtgagaacttatgaaaacaaattatggcatgttcataagctgttttcagcttatgttcatcagctctccaagatagctta 30573969  T
Q  372 tga 374  Q
    |||    
T  30573970 tga 30573972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 31010501 - 31010421
Alignment:
Q  288 tgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatag 367  Q
    |||||| |||| ||||| ||||||||||||| ||||  |||||||||||||||||||| || ||||| ||||||| |||||    
T  31010501 tgtttgtgaaagcttatagaaacaacttatgacatgtccataagctgttttcagcttaattccataagctctctatgatag 31010421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 50004740 - 50004689
Alignment:
Q  299 ccttatggaaacaacttatggcatggtcataagctgttttcagcttagttca 350  Q
    |||||||||||||||||||| |||| || |||||||||||||||||| ||||    
T  50004740 ccttatggaaacaacttatgacatgttcttaagctgttttcagcttatttca 50004689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 374
Target Start/End: Complemental strand, 37273248 - 37273146
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagctta 371  Q
    ||||||| |||| |||||||| || | ||||||||||||||||||| ||||  |||||| |||||||| |||| || |||||  |||| | |||||||||    
T  37273248 aagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagctta 37273149  T
Q  372 tga 374  Q
    |||    
T  37273148 tga 37273146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 30923883 - 30923956
Alignment:
Q  302 tatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    |||||||||| |||||| ||||   ||||||||||||||||||| ||| |||| ||||||||||||| ||||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatga 30923956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 14548679 - 14548779
Alignment:
Q  275 gcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatg 373  Q
    |||||||||| ||||||||||| | |||||| ||||||| |||| |||  | ||| ||||||||||||||| || ||||| ||||| || ||| ||||||    
T  14548679 gcacttgtgagactgtttgagagagcttatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagctctccagaataacttatg 14548778  T
Q  374 a 374  Q
    |    
T  14548779 a 14548779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 27294460 - 27294388
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||||| ||||||||||| | || || ||||||||| |||  ||| |||||||||||||||| ||||    
T  27294460 aagcacttgtgagactgtttgagagagctcatagaaacaactcatgatatgctcataagctgttttcatctta 27294388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 41724310 - 41724254
Alignment:
Q  289 gtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||| |||| ||||||||||||||||||| ||||  |||||| |||||||||||||    
T  41724310 gtttgtgaaaacttatggaaacaacttatgacatgtccataagttgttttcagctta 41724254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 44014740 - 44014812
Alignment:
Q  259 ttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataag 331  Q
    ||||||||||||  || ||||||||| ||||||||||||| |||||| ||||| |||||| | || |||||||    
T  44014740 ttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgttcataag 44014812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 2152134 - 2152236
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagctta 371  Q
    |||||||||||| |||  |||||| |  ||||| |||||||||||| |||| || ||||||||||||| |||  ||| |||| ||||| ||||||| |||    
T  2152134 aagcacttgtgagactaattgagatattttatgaaaacaacttatgacatgttcgtaagctgttttcaacttgtttctataagctctcaaggatagttta 2152233  T
Q  372 tga 374  Q
    |||    
T  2152234 tga 2152236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 374
Target Start/End: Complemental strand, 41452633 - 41452535
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||||||| | | ||||||| ||||||| |||||||||||||  |||   |||||||||||||| |||| || || ||| |||| ||||||||||||||    
T  41452633 acttgtgagagtatttgagagaccttatagaaacaacttatgatatgtctataagctgttttcaccttatttccacaacttctccaggatagcttatga 41452535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 50211887 - 50211805
Alignment:
Q  235 ttgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttat 317  Q
    ||||||||||| | |||| | | ||||||||||| |  |||||||||| | ||||||||||| | |||||| |||||||||||    
T  50211887 ttgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttat 50211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 2304215 - 2304292
Alignment:
Q  261 atctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgtttt 338  Q
    ||||||||||  || ||||||||| ||| ||||||| |  ||||| || ||||||||| |||| ||||||||||||||    
T  2304215 atctactagcataaacacttgtgaaactatttgagagaaattatgaaagcaacttatgacatgttcataagctgtttt 2304292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 41644386 - 41644503
Alignment:
Q  258 cttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacct 356  Q
    |||||||||||||  ||||||||| || |||||||  || | |||||  |||||||||  | |||  ||||||||||||||||||||| || | |||  |    
T  41644386 cttatctactagcataagcacttgagacactgtttaggagaacttataaaaacaacttgggacattttcataagctgttttcagcttatttccttaagat 41644485  T
Q  357 ctctaggatagcttatga 374  Q
    ||||| ||||||||||||    
T  41644486 ctctacgatagcttatga 41644503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 20194954 - 20195074
Alignment:
Q  238 tttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttt 337  Q
    ||||||||||||||| | | ||||||| || ||  ||||| |||||| |||||||| || | |||||| |||||  ||||| |||  ||| ||| |||||    
T  20194954 tttggattgatttatttgaacttatcttcttgcataagcagttgtgagactgtttgtgagagcttatgaaaacagtttatgacatattcaaaagttgttt 20195053  T
Q  338 tcagcttagttcataacctct 358  Q
    |||||||  ||||||| ||||    
T  20195054 tcagcttttttcataagctct 20195074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 31710847 - 31710915
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||  ||||||| |||| |||||  |||||||||||| ||||  ||| ||||||||||||||||    
T  31710847 acttgtgagtctgtttgtgaaagcttataaaaacaacttatgacatgcccatgagctgttttcagctta 31710915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 31711102 - 31711170
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||  ||||||| |||| |||||  |||||||||||| ||||  ||| ||||||||||||||||    
T  31711102 acttgtgagtctgtttgtgaaagcttataaaaacaacttatgacatgcccatgagctgttttcagctta 31711170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 306413 - 306338
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||||||||||| |||||| ||||  |||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  306413 cttatggaaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatga 306338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 30523746 - 30523671
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    ||||||||||||||||||| |||| |||||||||||||||| || | ||| |||||||||| ||||||||||||||    
T  30523746 cttatggaaacaacttatgccatgttcataagctgttttcaactaatttctataacctctcaaggatagcttatga 30523671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 33737681 - 33737618
Alignment:
Q  276 cacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttc 339  Q
    ||||||||  ||||||||||| | |||||| | ||||||||||||||| |||||||||||||||    
T  33737681 cacttgtgcaactgtttgagagaacttatgaacacaacttatggcatgttcataagctgttttc 33737618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 281808 - 281906
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||||||| |||||||| || | || |||||| ||||||||| ||||   ||||| ||||||||||||| || ||| | ||||||||||||||||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatga 281906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 373
Target Start/End: Complemental strand, 34939612 - 34939526
Alignment:
Q  288 tgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatg 373  Q
    ||||||||| | ||||||||||||||||||| || |  | |||| ||||||||||||| || ||||||||||  |||||||||||||    
T  34939612 tgtttgagagagcttatggaaacaacttatgacacgtccgtaagttgttttcagcttatttccataacctcttcaggatagcttatg 34939526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 371
Target Start/End: Complemental strand, 4420730 - 4420658
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagctta 371  Q
    ||||| ||||||| ||||| |||| ||||||||||||||||||||| || ||||| ||||| | |||||||||    
T  4420730 cttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatagctta 4420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 31686321 - 31686421
Alignment:
Q  275 gcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta-gttcataacctctctaggatagcttatg 373  Q
    |||||||||| | ||||||||| | |||||  |||||||||||| || | | |||| |||||||||||||| || | ||| ||||| |||||||||||||    
T  31686321 gcacttgtgacattgtttgagagaacttatcaaaacaacttatgacaagtttataatctgttttcagcttatgtccgtaagctctccaggatagcttatg 31686420  T
Q  374 a 374  Q
    |    
T  31686421 a 31686421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 2117490 - 2117415
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    ||||| ||||||| ||||||||||   |||||||||||| |||||| ||| |||| |||||||||||| |||||||    
T  2117490 cttatagaaacaatttatggcatgtctataagctgtttttagcttatttcaataagctctctaggataacttatga 2117415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 2460070 - 2460157
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatg 323  Q
    |||||||||| | |||| | | |||||  ||||||  ||| |||||||| ||||||||||| | ||||||||||||||||||| ||||    
T  2460070 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatg 2460157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 3738197 - 3738106
Alignment:
Q  259 ttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttca 350  Q
    ||||||||||||  |||| ||||||| ||||||||| | | ||| |||||||| |||||| ||||  ||||||||| ||||| |||| ||||    
T  3738197 ttatctactagcataagcccttgtgagactgtttgaaagatcttgtggaaacagcttatgacatgtccataagctgctttcaacttatttca 3738106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 27595523 - 27595590
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttca 340  Q
    |||||||| ||| |||||||| || |  |||||||||||||||||| |||| ||||||||| ||||||    
T  27595523 aagcacttatgagactgtttgggagaatttatggaaacaacttatgacatgttcataagctattttca 27595590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 27693399 - 27693462
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttca 340  Q
    |||||||| ||| ||||||| |  |||||||||||||||||| |||| ||||||||| ||||||    
T  27693399 acttgtgagactatttgagagaatttatggaaacaacttatgacatgttcataagctattttca 27693462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 32917308 - 32917246
Alignment:
Q  276 cacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgtttt 338  Q
    ||||||||| |||||||| || | ||||||||||||||||||| ||||  |||||||| ||||    
T  32917308 cacttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagctttttt 32917246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 6647471 - 6647399
Alignment:
Q  303 atggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    ||||||| | |||||| |||| ||||||| |||||||| |||| || ||||| ||||||| ||||||||||||    
T  6647471 atggaaatagcttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagcttatga 6647399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 374
Target Start/End: Complemental strand, 34939852 - 34939756
Alignment:
Q  279 ttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||||| |||||||  || | |||| ||||||| |||||| ||||  |||||  ||||||||||||| || ||||| ||||| ||||||||||||||    
T  34939852 ttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataaactctccaggatagcttatga 34939756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 3610681 - 3610791
Alignment:
Q  258 cttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacct 356  Q
    |||||||||| ||  || ||||||||||||| |||| ||||||||||||||||| || ||| ||||  |||||||  ||||||||||| ||| |||| ||    
T  3610681 cttatctactggcctaaccacttgtgatactttttgggaaaccttatggaaacagctaatgacatgtccataagcctttttcagcttatttctataagct 3610780  T
Q  357 ctctaggatag 367  Q
    |||||||||||    
T  3610781 ctctaggatag 3610791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 36598312 - 36598389
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttca 350  Q
    ||||| |||||| | ||||||||| | |||||||||||| |||||| |||| ||||||||||||||||||||| ||||    
T  36598312 aagcaattgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttatttca 36598389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 25670542 - 25670614
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||| ||||||| ||||||||||||| |||||| |||||||||||| |||| | ||||  |||||||||||||    
T  25670542 aagctcttgtgagactgtttgagaaaacttatgaaaacaacttatgacatgttaataaattgttttcagctta 25670614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 36538019 - 36537951
Alignment:
Q  276 cacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctt 344  Q
    ||||||||| | ||||||||| | ||||||||||||||||||| |||| ||||||| |||||| |||||    
T  36538019 cacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttcataagttgtttttagctt 36537951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 48157076 - 48157148
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||| |||||| |||||||| || | ||||| ||||||||||||| ||||  ||||||||||||||||||||    
T  48157076 aagcatttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagctta 48157148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 23215006 - 23214888
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgt 335  Q
    |||||||||||| |||| | | |||||||||||||  || ||||| ||| ||||||||||| |  ||||| |||||||||||| |||   |||||||| |    
T  23215006 tgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacatttccataagctct 23214907  T
Q  336 tttcagctta-gttcataa 353  Q
     ||||||||| ||||||||    
T  23214906 attcagcttatgttcataa 23214888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 372
Target Start/End: Original strand, 9423578 - 9423650
Alignment:
Q  301 ttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttat 372  Q
    |||||||||||| ||||| |||| ||||||| ||||||||||||| ||| | || ||||| ||||||||||||    
T  9423578 ttatggaaacaatttatgacatgttcataagttgttttcagcttatttcaagaagctctccaggatagcttat 9423650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 374
Target Start/End: Original strand, 24363519 - 24363659
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatgg-catggtcataagctg 334  Q
    ||||||||||| ||||| | |  ||||||||||||  |||||||| ||| |  ||||| ||  ||||| ||||||||  ||| | ||||  |||||| ||    
T  24363519 tgtttggattgttttatttgagtttatctactagcataagcacttatgagatagtttgggaggccttaaggaaacaaggtattgacatgtccataagttg 24363618  T
Q  335 ttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    ||||||||||| ||| |||||||||| ||||||||||||||    
T  24363619 ttttcagcttatttccataacctctccaggatagcttatga 24363659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 28165220 - 28165105
Alignment:
Q  258 cttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacct 356  Q
    ||||||||| |||  |||||||| ||| ||| ||||||| | |||||||||||| || | | | || |||||||||||||||| |||| || ||||| ||    
T  28165220 cttatctaccagcataagcacttatgagactctttgagatagcttatggaaacagctcaagacctgttcataagctgttttcaacttatttccataagct 28165121  T
Q  357 ctctaggatagcttat 372  Q
    ||| | ||||||||||    
T  28165120 ctccatgatagcttat 28165105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 33894741 - 33894642
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagctta 371  Q
    |||||||||||| |||||||| || | |||||| ||||| | |||| ||||  |||||| ||||||||||||| ||| |||| || || |||||||||||    
T  33894741 aagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatttcaataaactttccaggatagctta 33894642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 11048107 - 11048069
Alignment:
Q  307 aaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  11048107 aaacaacttatgacatgttcataagctgttttcagctta 11048069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 12234872 - 12234942
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagct 369  Q
    ||||| ||||||||||||| ||||   ||||||||||||||||||| || ||||| |||||||||| ||||    
T  12234872 cttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctctaggaaagct 12234942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 19719093 - 19719048
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||| |||||||||||| |||| |||||| ||||||||||||||    
T  19719093 cttatgaaaacaacttatgacatgttcataaactgttttcagctta 19719048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 7244764 - 7244692
Alignment:
Q  303 atggaaacaacttatggcatggtcataagctgttttcagctta-gttcataacctctctaggatagcttatga 374  Q
    |||||||||| ||||| |||| ||||||| |||||||||||||  ||||||| ||||| |  |||||||||||    
T  7244764 atggaaacaatttatgacatgctcataagttgttttcagcttattttcataagctctccaatatagcttatga 7244692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 27626084 - 27626144
Alignment:
Q  278 cttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgtttt 338  Q
    ||||||| | ||||||||||| |||||||||||| |||||| ||||  ||||| |||||||    
T  27626084 cttgtgagattgtttgagaaagcttatggaaacagcttatgacatgtccataaactgtttt 27626144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 29290420 - 29290380
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttca 340  Q
    ||||||||||||||||||| ||||  |||||||||||||||    
T  29290420 cttatggaaacaacttatgacatgtccataagctgttttca 29290380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 39539769 - 39539809
Alignment:
Q  305 ggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||||||| ||||  ||||||||||||||||||||    
T  39539769 ggaaacaacttatgacatgtccataagctgttttcagctta 39539809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 44808272 - 44808200
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||| |||| | ||||||||| | |||||||| ||| |||||||| ||||  ||||| ||||||||||||||    
T  44808272 aagcagttgtcagactgtttgatagaccttatgaaaataacttatgacatgtccataacctgttttcagctta 44808200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 373
Target Start/End: Original strand, 2458549 - 2458623
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatg 373  Q
    |||||| | ||| ||||||||||| ||||||||||||||||| ||| || ||||| |||||||||||||||||||    
T  2458549 cttatgaagacagcttatggcatgttcataagctgttttcagtttatttccataagctctctaggatagcttatg 2458623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 374
Target Start/End: Complemental strand, 14949974 - 14949878
Alignment:
Q  279 ttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    |||||| |||||||  || | |||||| ||| |||||||| ||||  |||||||||||||||||||| ||| |||| |||| |||||||||||||||    
T  14949974 ttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataatctctttaggatagcttatga 14949878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 11569416 - 11569515
Alignment:
Q  276 cacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta-gttcataacctctctaggatagcttatga 374  Q
    ||||||||| ||||||| ||| | |||||||||||| |||||| ||||  |||||| |||||||||||||  |||| || ||||| | ||||||||||||    
T  11569416 cacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatga 11569515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 345
Target Start/End: Original strand, 31875541 - 31875623
Alignment:
Q  263 ctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||  || |||| |||| ||||||||||||| ||||||||||||||||||| ||||  |||||||  |||||| ||||    
T  31875541 ctactagcataaacactagtgacactgtttgagaaagcttatggaaacaacttatgacatgtccataagccattttcaactta 31875623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 8060770 - 8060681
Alignment:
Q  286 actgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    ||||||||||| | |||||| |||||| |||||| | | ||||||| | ||||||||||| || ||||| ||||||||||| ||||||||    
T  8060770 actgtttgagagagcttatgaaaacaaattatggaaagttcataagttattttcagcttatttccataagctctctaggattgcttatga 8060681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 43368619 - 43368728
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgt 335  Q
    |||||||||||| |||| | ||||||||||||| |  ||||| |||||| |||| |||  | | |||||| |||||||||||| |||| |||| |||| |    
T  43368619 tgtttggattgacttatttgatcttatctactaacataagcatttgtgagactggttgtaacagcttatgaaaacaacttatgacatgttcattagctat 43368718  T
Q  336 tttcagctta 345  Q
    ||||| ||||    
T  43368719 tttcaactta 43368728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 16162888 - 16162816
Alignment:
Q  259 ttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataag 331  Q
    ||||||||||||  || ||||||||| ||||||||||||| |||||| ||||| |||||| | || |||||||    
T  16162888 ttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgttcataag 16162816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 20672824 - 20672764
Alignment:
Q  313 cttatggcatggtcataagctgttttcagctta-gttcataacctctctaggatagcttat 372  Q
    |||||| |||| |||||||||||||||||||||  ||||||| ||||| ||||||||||||    
T  20672824 cttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttat 20672764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 26479936 - 26479792
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgt 335  Q
    |||||||||||| |||| ||| |||||||| |  | |||| |||||||| ||| |||| || | ||||||||||||||||||| ||||   ||||| | |    
T  26479936 tgtttggattgacttatttaagcttatctattgacacaaggacttgtgaaactatttgcgagagcttatggaaacaacttatgtcatgtctataagtttt 26479837  T
Q  336 tttcagcttagtt-cataacctctctaggatagcttatgacaatt 379  Q
    ||||||| || || ||||| ||||| || |||| |||||| ||||    
T  26479836 tttcagcgtatttccataagctctccagaataggttatgaaaatt 26479792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 30191097 - 30191169
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||| | |||||||| || | ||||||||||||||||||| |||| ||| ||  |||||||||||||    
T  30191097 aagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagctta 30191169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 30277248 - 30277303
Alignment:
Q  320 catggtcataagctgttttcagcttagttc-ataacctctctaggatagcttatga 374  Q
    ||||| |||||| ||||||||||||| ||| |||| ||||||||||||||||||||    
T  30277248 catggccataagttgttttcagcttatttccataaactctctaggatagcttatga 30277303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 3254305 - 3254239
Alignment:
Q  307 aaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagcttat 372  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||| |||  |||| |||||||||||||    
T  3254305 aaacagcttatgacatgttcataagctgttttcagcttatttctatacactctataggatagcttat 3254239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 374
Target Start/End: Original strand, 42215270 - 42215364
Alignment:
Q  281 gtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||| |||||||| || | || ||| ||||| |||||| | || ||||||||||||||||||||| || ||||| ||||| |||||||| |||||    
T  42215270 gtgacactgtttgggagaactaatgaaaacagcttatgacttgttcataagctgttttcagcttatttacataagctctccaggatagcatatga 42215364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 7918701 - 7918781
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttat 317  Q
    |||||| ||||||| || ||| |||||||||||||  || ||||||||| |||||||| || | |||||| |||||||||||    
T  7918701 tgtttgaattgatt-atttaaacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 7918781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 8629564 - 8629503
Alignment:
Q  279 ttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttca 340  Q
    |||||| || |||||||| | |||||| |||||||||||| |||| ||||||| ||||||||    
T  8629564 ttgtgagaccgtttgagagaacttatgaaaacaacttatgacatgatcataagttgttttca 8629503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 9700152 - 9700043
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgt 335  Q
    |||||||||| | |||| | | |||||||||||||  || ||||||||| ||| ||||||| | ||| || || ||| ||||| ||||  ||||||||||    
T  9700152 tgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctgt 9700053  T
Q  336 tttcagctta 345  Q
    ||||| ||||    
T  9700052 tttcacctta 9700043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 31862554 - 31862505
Alignment:
Q  326 cataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    |||||||||||||||||||| || ||||| |||||||||||| |||||||    
T  31862554 cataagctgttttcagcttattttcataagctctctaggataacttatga 31862505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 41442416 - 41442481
Alignment:
Q  280 tgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||| ||||||||| | | |||||| |||||| ||||| |||| ||||| |||||||||||||||    
T  41442416 tgtgagactgtttgacagaacttatgaaaacaatttatgacatgttcatatgctgttttcagctta 41442481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 2487964 - 2488036
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||||| |||||||| || | |||||| |||||||||||  |||| ||| || ||||||| ||||||    
T  2487964 aagcacttgtgagactgtttgggagaacttatgaaaacaacttataacatgttcaaaaactgtttttagctta 2488036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 27779468 - 27779512
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttat 317  Q
    |||||||||||||||| ||||| ||| ||||| ||||||||||||    
T  27779468 aagcacttgtgatactctttgaaaaagcttatcgaaacaacttat 27779512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 43504889 - 43504793
Alignment:
Q  249 ttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||| ||| |||||||||| ||| |||||||||||  |||||||  || | || ||| |||||||||| | | || | |||||||||||||||||||    
T  43504889 ttatttaagcttatctactggcttaagcacttgtgtgactgtttcggagaactgatgaaaacaacttacgacttgtttataagctgttttcagctta 43504793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 12685 - 12758
Alignment:
Q  298 accttatggaaacaacttatggcatggtcataagctgttttcagcttag-ttcataacctctctaggatagctt 370  Q
    ||||||||||||||||||||| ||||  |||||| |||||||||||||| | ||||| ||||||| ||||||||    
T  12685 accttatggaaacaacttatgacatgtccataagttgttttcagcttagctccataagctctctaagatagctt 12758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 33723301 - 33723410
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgt 335  Q
    |||||||||||| |||| | | ||||||||||| |  || ||||||||| |||| ||| |||| |||||||||||| || ||| |||| |||| || |||    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcatgagatgt 33723400  T
Q  336 tttcagctta 345  Q
    ||||||||||    
T  33723401 tttcagctta 33723410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 374
Target Start/End: Original strand, 10199330 - 10199466
Alignment:
Q  239 ttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgtttt 338  Q
    ||||||||| |||| | | ||||||||||| |  |||||||||||| ||| |||| || | || ||| ||| | |||||| |||| ||||||| ||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgtttt 10199429  T
Q  339 cagctta-gttcataacctctctaggatagcttatga 374  Q
    |||||||  ||||||| |||||||  |||||||||||    
T  10199430 cagcttattttcataagctctctaaaatagcttatga 10199466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 31517696 - 31517768
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||||| |||||||| || | |||||  |||||||| ||| |||| |||||||||||||||||||||    
T  31517696 aagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagctta 31517768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 374
Target Start/End: Original strand, 26461860 - 26461999
Alignment:
Q  236 tgtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgt 335  Q
    ||||||||||| ||||||| | | |||||| | || ||||||||| | ||||||||||  | | |||||| ||||||| |||||||||  |||  | |||    
T  26461860 tgtttggattggtttatatgagcatatctattggcacaagcactttttatactgtttggcagagcttatgaaaacaacatatggcatgtccatgggttgt 26461959  T
Q  336 tttcagctta-gttcataacctctctaggatagcttatga 374  Q
    ||||||||||  ||||||| ||||  ||||||||||||||    
T  26461960 tttcagcttattttcataagctctgcaggatagcttatga 26461999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 4699571 - 4699673
Alignment:
Q  273 aagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctctctaggatagctta 371  Q
    |||| ||||||||||  ||||| ||  |||||| |||||||||||| |||| |||||||||||||| |||||| ||| |||| |||||  |||||| |||    
T  4699571 aagcgcttgtgatacaatttgataatacttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataagctctccgggatagttta 4699670  T
Q  372 tga 374  Q
    |||    
T  4699671 tga 4699673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 6659830 - 6659724
Alignment:
Q  237 gtttggattgatttatataatcttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgtt 336  Q
    ||||||||||| |||| | | |||||||||||||  |||||||||||| ||| |||| || | ||||||  |||||| | |||||||  |||||| ||||    
T  6659830 gtttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttatgataacaacatttggcatgtccataagttgtt 6659731  T
Q  337 ttcagct 343  Q
    |||||||    
T  6659730 ttcagct 6659724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 3223748 - 3223683
Alignment:
Q  306 gaaacaacttatggcatggtcataagctgttttcagcttagttcataacctctctaggatagctta 371  Q
    ||||||||||||| |||| | ||||| ||||||||||||| ||||||| ||| |||||||| ||||    
T  3223748 gaaacaacttatgacatgtttataagttgttttcagcttatttcataagctcgctaggataactta 3223683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 4482033 - 4481972
Alignment:
Q  284 atactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||||||| | |||||| |||||||||||  |||| |||||||||||||| ||||||    
T  4482033 atactgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttttagctta 4481972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 17628710 - 17628644
Alignment:
Q  272 caagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagc 342  Q
    ||||||||||||| |||||| |||    ||||||||||||||||||| ||||  |||||||||||||||||    
T  17628710 caagcacttgtgagactgttggag----cttatggaaacaacttatgacatgtccataagctgttttcagc 17628644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 37593643 - 37593712
Alignment:
Q  276 cacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||| | |||||||| |||| || ||| | |||||||||| |||| |||||||||||||||||||||    
T  37593643 cacttgttagactgtttgggaaaactaatgaacacaacttatgacatgttcataagctgttttcagctta 37593712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 345
Target Start/End: Complemental strand, 29723618 - 29723531
Alignment:
Q  258 cttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||| |||||||  ||||||||||||||| |||||| | | || ||||||||| |||||| ||||  ||||| ||||||||| ||||    
T  29723618 cttatttactagcataagcacttgtgatacagtttgaaagaactaatggaaacagcttatgacatgtccataaactgttttcaactta 29723531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 42397806 - 42397767
Alignment:
Q  306 gaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  42397806 gaaacaacttatggcatgttcataagttgttttcagctta 42397767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 3070080 - 3070118
Alignment:
Q  307 aaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  3070080 aaacaacttatgacatgttcataagctgttttcagctta 3070118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 35925777 - 35925703
Alignment:
Q  300 cttatggaaacaacttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatg 373  Q
    |||||| ||||| |||||| |||| |||||||||||||||| |||| || ||||| ||||| | |||||||||||    
T  35925777 cttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttatg 35925703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 37811960 - 37811894
Alignment:
Q  279 ttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||||| |||||| | |||||| ||||| |||||| |||| |||||| ||||||||| ||||    
T  37811960 ttgtgatactggttgagagaacttatgaaaacagcttatgacatgttcataaactgttttcaactta 37811894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 6977034 - 6976973
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgtttt 338  Q
    ||||||||  ||||||| || | || |||||||||||||||| |||| ||||||||||||||    
T  6977034 acttgtgaggctgtttgcgagagctaatggaaacaacttatgacatgttcataagctgtttt 6976973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 25479654 - 25479593
Alignment:
Q  314 ttatggcatggtcataagctgttttcagcttagtt-cataacctctctaggatagcttatga 374  Q
    ||||| |||| |||| || ||||||||||||| || ||||| ||||||||||||||||||||    
T  25479654 ttatgacatgttcattagttgttttcagcttattttcataagctctctaggatagcttatga 25479593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 374
Target Start/End: Original strand, 32515383 - 32515499
Alignment:
Q  259 ttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagcttagttc-ataacctc 357  Q
    |||||||||| |  |||||||||||| |||||||| || | |||||||||||| | |||| ||||   ||||| |||||||| ||||  || |||| |||    
T  32515383 ttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctc 32515482  T
Q  358 tctaggatagcttatga 374  Q
    || | ||||||||||||    
T  32515483 tccatgatagcttatga 32515499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 37272535 - 37272595
Alignment:
Q  258 cttatctactagctcaagcacttgtgatactgtttgagaaaccttatggaaacaacttatg 318  Q
    |||||||||| ||| |||||||||||| | ||||||||| | |||||||| ||| ||||||    
T  37272535 cttatctactggcttaagcacttgtgagattgtttgagagagcttatggagacagcttatg 37272595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 38170649 - 38170717
Alignment:
Q  276 cacttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctt 344  Q
    ||||||||| |||| ||| || | |||||| ||||| |||||| |||| ||||||| ||||||||||||    
T  38170649 cacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagctt 38170717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 43954006 - 43954073
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||| ||||||||||| | ||||||||||| |||||| |  | |||||||| |||||||||||||    
T  43954006 acttgtgaaactgtttgagatagcttatggaaaccacttat-gatttgtcataagttgttttcagctta 43954073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 9604 - 9665
Alignment:
Q  284 atactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    ||||||||||||| | |||||| |||||||||||  |||| |||||||||||||| ||||||    
T  9604 atactgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttttagctta 9665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 10577 - 10645
Alignment:
Q  277 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 345  Q
    |||||||| ||||||||| ||| |||||| |||||||| ||| ||||  |||||| |||||||||||||    
T  10577 acttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgttttcagctta 10645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University