View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3685_low_4 (Length: 411)
Name: NF3685_low_4
Description: NF3685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3685_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 52998314 - 52998701
Alignment:
| Q |
17 |
cacaacaaaattaattaatattgggggcggaatatatgcacatgcagtactactcctcatatatatcccacatttagaatgcatattataagagataagg |
116 |
Q |
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| T |
52998314 |
cacaacaaaattaattaatattgggtgcggaatatatgcacatgcagtactactcctcat------cccacatttagaatgcatattataagagataagg |
52998407 |
T |
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| Q |
117 |
gattggctgcatacaatgtggtcctcgttctatctacaatatattata------tagagatatagcagaatgatagtcatattcagatataaattttggt |
210 |
Q |
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| T |
52998408 |
gattggctgcatacaatgtggtcctcgttctatctgcaatatattatatatatatagagatatagcagaatgatagtcatattcagatataaattttggt |
52998507 |
T |
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| Q |
211 |
cgataaaatattaattggtagagaatcatattgatatggaggattggtatttctatctgcagaattaactactagctagttagacatttttgtttttcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52998508 |
cgataaaatattaattggtagagaatcatattgatatggaggattggtatttctatctgcagaattaactactagctagttagacatttttgtttttcat |
52998607 |
T |
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| Q |
311 |
tcaattcccatgttctaaggtcaatattaatcccaaatatatacaatctcatcatgtagctaatgcaaccgcgtcttgttctttgttcatctct |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
52998608 |
tcaattcccatgttctaaggtcaatattaatcccaaatatatacaatctcatcatgtacctaatgcaaccgcgtcttgttctttgttcttctct |
52998701 |
T |
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