View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3685_low_5 (Length: 380)
Name: NF3685_low_5
Description: NF3685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3685_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 123 - 368
Target Start/End: Original strand, 16749771 - 16750015
Alignment:
| Q |
123 |
ttgataaaatgacaatcgagtgactttaatcctactattattttcttcttaaattatacttccttcgatcatatttataacnnnnnnnttcattataaca |
222 |
Q |
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| T |
16749771 |
ttgataaaatgacaatcgagtgactttaatcctactattattttcttcttaaattatacttccttcggtcacatttataacaaaaaa-ttctttataaca |
16749869 |
T |
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| Q |
223 |
tgtggtgaccgaagggagtttaaccgattgtttcctatagttaattgtctgttacataaccaacaggcaaaatgttttgttttatgactatgcattagtt |
322 |
Q |
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| T |
16749870 |
tgtggtgaccgaagggagtttaaccgattgtttcctatagttaattgtctgttacataaccaacaggcaaaatgttttgttttatgactatgcatcagtt |
16749969 |
T |
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| Q |
323 |
agtgtttatataatactactatttgctgaaatgtaaaatgatgatg |
368 |
Q |
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| T |
16749970 |
agtgtttatataatactactatttgctgaaatgtaaaatgacgatg |
16750015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 16749671 - 16749710
Alignment:
| Q |
20 |
cactgcgtgttaattcaatccttatgacattaatacttat |
59 |
Q |
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| T |
16749671 |
cactgcgtgttaattcaatccttatgacattaatacttat |
16749710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 16749710 - 16749753
Alignment:
| Q |
82 |
tgctcatgactcttcttccactaaaccatatttttccttgcttg |
125 |
Q |
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| T |
16749710 |
tgctcgtgactcttcttccactaaaccatatttttccttgcttg |
16749753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 34247473 - 34247534
Alignment:
| Q |
20 |
cactgcgtgttaattcaatccttatgacattaatacttataatgcatgaaaaaacctttctttgc |
84 |
Q |
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| T |
34247473 |
cactacgtgttaattcaatccttgtgacattaacactt---aagcatgaaaaaacctttccttgc |
34247534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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