View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3685_low_7 (Length: 311)
Name: NF3685_low_7
Description: NF3685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3685_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 3285274 - 3284985
Alignment:
| Q |
15 |
aaaaaagacaaacaatgtgctacaatttcaaaaactaaattggttacggttattaagagtttctaaaacaaacnnnnnnnncacatcattgcaacttgaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3285274 |
aaaaaagacaaacaatgtgctacaatttcaaaaactaaattggttacggttattaagagtttctaaaacaaacaaaaaaaacacatcattgcaacttgaa |
3285175 |
T |
|
| Q |
115 |
ttgccgacatctaaagcaattttctttttcttggtcgaccaatctattaaaagtatgtgctttgttgagctggtgctgaggagtgtgagaaggaaagtgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3285174 |
ttgccgacatctaaagcaattttctttttcttggtcgacctatctattaaaagtatgtgctttgttgagctggtgctgaggagtgtgagaaggaaagtgg |
3285075 |
T |
|
| Q |
215 |
gttcatgccatcactatatacagagcatttagttttagtctaagtgcatctactccaaacacattggttccttaaaccatgattcctatg |
304 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3285074 |
gttcatgccatcacaatatacagagcatttagttttagtctaagtgcatctactccaaacacattggttccttaaaccatgattcctatg |
3284985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 3271757 - 3271474
Alignment:
| Q |
15 |
aaaaaagacaaacaatgtgctacaatttcaaaaactaaattggttacggttattaagagtttctaaaacaaacnnnnnnnncacatcattgcaacttgaa |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| || |||||| ||||| |
|
|
| T |
3271757 |
aaaaaagacaaaatatgtgctacaatttcaaaaactaaattgattatggttattagtagtttctaaaacaaa------aatcatatcattatggtttgaa |
3271664 |
T |
|
| Q |
115 |
ttgccgacatctaaagcaattttctttttcttggtcgaccaatctattaaaagtatgtgctttgttgagctggtgctgaggagtgtgagaaggaaagtgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3271663 |
ttgccgacatctaaagcaattttctttttcttggtcgacctatctattaaaagtatgtgctttgttgagctggtgctgaggagtgtgagaaggaaagtgg |
3271564 |
T |
|
| Q |
215 |
gttcatgccatcactatatacagagcatttagttttagtctaagtgcatctactccaaacacattggttccttaaaccatgattcctatg |
304 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3271563 |
gttcataccatcactatataaagagcatttagtcttagtctaagtgcatctactccaaacacattggttccttaaaccatgattcctatg |
3271474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 3250934 - 3250895
Alignment:
| Q |
255 |
taagtgcatctactccaaacacattggttccttaaaccat |
294 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3250934 |
taagtgcatgcactccaaacacattggttccttaaaccat |
3250895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University