View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3685_low_8 (Length: 292)
Name: NF3685_low_8
Description: NF3685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3685_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 32343297 - 32343412
Alignment:
| Q |
21 |
atccctcctacacctcctccaattcctttgtaagcaaaacctccaattccacctccaattcccttagatgttccacctccataacctccaattccaccta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
32343297 |
atccctcctacacctcctccaattcctttgtaagcaaaacctccaattccacctccaattcccttagatattccacctccataacctccaattccaccaa |
32343396 |
T |
|
| Q |
121 |
caattcccttagatat |
136 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32343397 |
caattcccttagatat |
32343412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 32343379 - 32343421
Alignment:
| Q |
58 |
aacctccaattccacctccaattcccttagatgttccacctcc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
32343379 |
aacctccaattccaccaacaattcccttagatattccacctcc |
32343421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University