View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3685_low_9 (Length: 283)

Name: NF3685_low_9
Description: NF3685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3685_low_9
NF3685_low_9
[»] chr3 (6 HSPs)
chr3 (1-240)||(36429857-36430097)
chr3 (1-95)||(2544977-2545071)
chr3 (1-95)||(35127177-35127271)
chr3 (1-95)||(46278518-46278612)
chr3 (1-83)||(27221417-27221503)
chr3 (62-95)||(9291868-9291901)
[»] chr6 (3 HSPs)
chr6 (1-95)||(12630-12724)
chr6 (1-95)||(17665-17759)
chr6 (1-95)||(9904-9998)
[»] chr5 (4 HSPs)
chr5 (1-95)||(2643631-2643725)
chr5 (5-95)||(2315886-2315976)
chr5 (1-95)||(11016000-11016094)
chr5 (24-89)||(29836558-29836623)
[»] chr4 (7 HSPs)
chr4 (1-95)||(28071416-28071510)
chr4 (1-95)||(50063747-50063841)
chr4 (15-72)||(25155102-25155159)
chr4 (59-95)||(25516846-25516882)
chr4 (59-95)||(25536736-25536772)
chr4 (1-32)||(25516815-25516846)
chr4 (1-32)||(25536772-25536803)
[»] chr1 (4 HSPs)
chr1 (1-95)||(35754024-35754118)
chr1 (1-95)||(32060517-32060611)
chr1 (1-71)||(23552468-23552538)
chr1 (1-95)||(8081903-8081991)
[»] chr8 (5 HSPs)
chr8 (1-95)||(7839997-7840091)
chr8 (1-95)||(29668750-29668844)
chr8 (1-95)||(30735933-30736027)
chr8 (3-94)||(11676270-11676361)
chr8 (3-62)||(11668019-11668078)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36430097 - 36429857
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         
T  36430097 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccttttt 36429998  T
Q  101 nngaaaccttgacgctacgttcaaaactcataaactgctcgaaactgaagacttg-tttatcactgatactcagagtgtctccacattatgaatgatact 199  Q
      |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36429997 ttgaaaccttgacgctacgttcaaaactcataaactactcgaaactgaagacttgctttatcactgatactcagagtgtctccacattatgaatgatact 36429898  T
Q  200 agttttgagtgaatgttttgttgttgaactcttgtataggg 240  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36429897 agttttgagtgaatgttttgttgttgaactcttgtataggg 36429857  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2545071 - 2544977
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2545071 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 2544977  T

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Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35127177 - 35127271
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127177 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 35127271  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 46278612 - 46278518
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  46278612 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacgttggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 46278518  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 27221503 - 27221417
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctg----ataccgttttgtaacggccgcaatcc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||||||||||||||||||||||||    
T  27221503 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgttttgtaacggccgcaatcc 27221417  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 9291901 - 9291868
Alignment:
Q  62 cgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    ||||||||||||||||||||||||||||||||||    
T  9291901 cgttttgtaacggccgcaatcccggtaccggtcc 9291868  T

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Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 12630 - 12724
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12630 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 12724  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 17665 - 17759
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17665 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 17759  T

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Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 9904 - 9998
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9904 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtaaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 9998  T

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Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2643631 - 2643725
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2643631 tcctgtgatttttgttctcggcgtgaaaaggtacaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 2643725  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 2315886 - 2315976
Alignment:
Q  5 gtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2315886 gtgatttttgttctcggcgtgaaaaggtccaaaaacgatcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 2315976  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11016094 - 11016000
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  11016094 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggccgctgataccgttttgtaacgtccgcaattccggtaccggtcc 11016000  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 29836623 - 29836558
Alignment:
Q  24 tgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtac 89  Q
    ||||||||| |||||||||| || || |||||  ||||| |||||||||| ||| |||||||||||    
T  29836623 tgaaaaggtgcaaaaacggtaacggtagctgcctataccattttgtaacgtccgaaatcccggtac 29836558  T

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Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 28071416 - 28071510
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071416 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 28071510  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 50063841 - 50063747
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50063841 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtgacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 50063747  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 25155159 - 25155102
Alignment:
Q  15 ttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaac 72  Q
    ||||| |||||||||||| |||||||||| ||||||||||| | ||||||||||||||    
T  25155159 ttctcagcgtgaaaaggtacaaaaacggtaacagtggctgccgttaccgttttgtaac 25155102  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 25516846 - 25516882
Alignment:
Q  59 taccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||||||||||||||||||    
T  25516846 taccgttttgtaacggccgcaatcccggtaccggtcc 25516882  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 25536772 - 25536736
Alignment:
Q  59 taccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||||||||||||||||||    
T  25536772 taccgttttgtaacggccgcaatcccggtaccggtcc 25536736  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 25516815 - 25516846
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggt 32  Q
    ||||||||||||||||||||||||||||||||    
T  25516815 tcctgtgatttttgttctcggcgtgaaaaggt 25516846  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 25536803 - 25536772
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggt 32  Q
    ||||||||||||||||||||||||||||||||    
T  25536803 tcctgtgatttttgttctcggcgtgaaaaggt 25536772  T

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Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35754118 - 35754024
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  35754118 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtacgggtcc 35754024  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 32060517 - 32060611
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32060517 tcctgtgatttttgttctcggcgtgaaaagatccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggcaccggtcc 32060611  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23552468 - 23552538
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaa 71  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23552468 tcctgtgatttttgttctcggcttgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaa 23552538  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8081991 - 8081903
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||||| |||||||||||||||||| |||| |||||||      ||||||||||||||||| |||||||||||||||||    
T  8081991 tcctgtgatttttgttctcggcatgaaaaggtccaaaaacgctcacggtggctg------ccgttttgtaacggccgtaatcccggtaccggtcc 8081903  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 7839997 - 7840091
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7839997 tcctgtgatttttgttctcgacctgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 7840091  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 29668844 - 29668750
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29668844 tcctgtgatttttgttctcggcgtgaaaaggtcgaaaaacggtcacggtggctgctgataccgttttgtaacggccacaatcccggtaccggtcc 29668750  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30735933 - 30736027
Alignment:
Q  1 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc 95  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  30735933 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggcctcaatcccggcaccggtcc 30736027  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 11676361 - 11676270
Alignment:
Q  3 ctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgataccgttttgtaacggccgcaatcccggtaccggtc 94  Q
    |||||||||||||||||  |||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  11676361 ctgtgatttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgccgataccgatttgtaacggccgcaatcccggtaccggtc 11676270  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 11668078 - 11668019
Alignment:
Q  3 ctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacagtggctgctgatacc 62  Q
    ||||| |||||||||||  |||||||||| |||||||||||||| |||||||| ||||||    
T  11668078 ctgtggtttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgccgatacc 11668019  T

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