View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_high_16 (Length: 351)
Name: NF3686_high_16
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 28 - 313
Target Start/End: Original strand, 19175696 - 19175981
Alignment:
| Q |
28 |
aagattcacaacgtaacaactttgcgtttgcaaccccaaaattcaaaaccataaattgcattcaaaatttgaaattgaagnnnnnnnnngataggcacag |
127 |
Q |
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| T |
19175696 |
aagattcacaacgtaacaactttgctttcgcaaccccaaaattcaaaaccataaattgcattcaaaatttgaaattgaagaaaaaaaaagataggcatag |
19175795 |
T |
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| Q |
128 |
tagtatgtcatatacctataaaatcggtaataatgcggccatctgagaatcgtccggtgggtttatcgaaaaccccattttgtccatatggtttacaatc |
227 |
Q |
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| T |
19175796 |
cagtatgttatatacctataaaatcggtaataacgcggccatctgagaatcgtccggtgggtttatcgaaaaccccattttgtccatatggtttacaatc |
19175895 |
T |
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| Q |
228 |
tgctttgttctcaggaatagtatctatatagttgttgttgccagaatcaacagtagaatcaccaaaaatgaaaagggcattattgg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19175896 |
tgctttgttctcaggaatagtatctatatagttgttgttgccagaatcaacagtagagtcaccaaaaatgaaaagagcattattgg |
19175981 |
T |
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