View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3686_high_19 (Length: 328)
Name: NF3686_high_19
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 36092339 - 36092041
Alignment:
| Q |
23 |
gaactcggtctctggtatatgacatgtgccgaaagttcaagctttccatcaattgttttagcatttggttgttttgctcaacagctctatttgtattaac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092339 |
gaactcggtctctggtatatgacatgtgccgaaagttcaagctttccatcaattgttttagcatttggttgttttgctcaacagctctatttgtattaac |
36092240 |
T |
|
| Q |
123 |
caattccttacgaagttgatttctttcctttctcatttcctcaaattcatgtctttgttgatctctttcatttctcatttcttcaagttcatgtctttgt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092239 |
caattccttacgaagttgatttctttcctttctcatttcctcaaattcatgtctttgttgatctctttcatttctcatttcttcaagttcatgtctttgt |
36092140 |
T |
|
| Q |
223 |
acccactcagttgatgaagaacatgagccacgataatttgacctccccttccctactaatacattagattccattccaagaccatacactcgacctttg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092139 |
acccactcagttgatgaagaacatgagccacgataatttggcctccccttccctactaatacagtagattccattccaagaccatacactcgacctttg |
36092041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 34565706 - 34565623
Alignment:
| Q |
179 |
gttgatctctttcatttctcatttcttcaagttcatgtctttgtacccactcagttgatgaagaacatgagccacgataatttg |
262 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || || ||||| |||||||| | ||| ||||||| |||||| ||||||||| |
|
|
| T |
34565706 |
gttgatctctttcatttctcatttgttcaagctcgtgcctttgcacccactcggatgaagaagaaccagagccatgataatttg |
34565623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University