View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_high_21 (Length: 315)
Name: NF3686_high_21
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 4002214 - 4002405
Alignment:
| Q |
11 |
attctcctttcctccaaaatatctctctcttttaaatcgataacaaaaggattggattggtttcatccacatgcgggtgaagattgaagaagaagaatga |
110 |
Q |
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| T |
4002214 |
attctcctttccttcaaaatatctctctcttt-aaatcgataacaaaaggattggattggtttcatctacatgcgggtgaagattgaagaagaagaatga |
4002312 |
T |
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| Q |
111 |
tctataatcttctataaagccacatacgggtgaagtaaaagagtaatctataatcttctataaagatatataaagccaatttccatttttggt |
203 |
Q |
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| T |
4002313 |
tctataatcttctataaagccacatacgggtgaagtaaaagagtaatctataatcttctataaagatatataaagccaatttccatttttggt |
4002405 |
T |
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