View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_high_22 (Length: 312)
Name: NF3686_high_22
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 84 - 309
Target Start/End: Complemental strand, 11591091 - 11590866
Alignment:
| Q |
84 |
gcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgct |
183 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11591091 |
gcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgct |
11590992 |
T |
|
| Q |
184 |
gttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttcatttctgaacatcttcaatctcatgtctcttacttggcatc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
11590991 |
gttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttcttttctgaatatcctcaatctaatgtctcttacttggcatc |
11590892 |
T |
|
| Q |
284 |
tggtttatttggctcaaaatgttcat |
309 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
11590891 |
tggtttatttggctcaaaatgttcat |
11590866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 84 - 309
Target Start/End: Original strand, 11646576 - 11646801
Alignment:
| Q |
84 |
gcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgct |
183 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11646576 |
gcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgct |
11646675 |
T |
|
| Q |
184 |
gttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttcatttctgaacatcttcaatctcatgtctcttacttggcatc |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
11646676 |
gttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcgtattcttcttttctgaatatcctcaatctgatgtctcttacttggcatc |
11646775 |
T |
|
| Q |
284 |
tggtttatttggctcaaaatgttcat |
309 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11646776 |
tggtttatttggctcaaaatgttcat |
11646801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 41833746 - 41833790
Alignment:
| Q |
265 |
atgtctcttacttggcatctggtttatttggctcaaaatgttcat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41833746 |
atgtctcttacttggcatctggtttatttggctcaaaatgttcat |
41833790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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