View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3686_high_24 (Length: 292)
Name: NF3686_high_24
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 14696264 - 14696525
Alignment:
| Q |
17 |
caccctcaccatgtcattgcttgaaattgaagtaatgtatgactctataaacttcatgacacctaagtgtctcctaatttgagatggaatttgttcttga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14696264 |
caccctcaccatgtcattgcttgaaattgaagtaatgtatgactctataaacttcatgacacctaagtgtctcctaatttgagatggaatttgttctgga |
14696363 |
T |
|
| Q |
117 |
ccgagcagtagattaaggctcatttacataggcccaaaccaaaacaaggccaattccgcatttcgttcaattactcctaacacatctctccccataggag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14696364 |
ccgagcagtagattaaggctcatttacataggcccaaaccaaaacaaggccaattccgcatttcgttcaattactcctaacacatctctccccgcaggag |
14696463 |
T |
|
| Q |
217 |
ggtgttcatagcacttcgggacccattcaaaccgaatggagaacgtctcccaaatatgccta |
278 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
14696464 |
ggtgttaatagcacttcgggccccattcaaatcgaatggagaacgtctcccaaacatgccta |
14696525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University