View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_high_25 (Length: 274)
Name: NF3686_high_25
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 1104330 - 1104084
Alignment:
| Q |
18 |
catcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcgttgacgcttctcaagtgtttggttcaaata |
117 |
Q |
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| T |
1104330 |
catcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcgttgacgcttctcaagtgtttggttcaaata |
1104231 |
T |
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| Q |
118 |
agttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgacaatttgagtaacagtcacc |
217 |
Q |
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| T |
1104230 |
agttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaattttgtttcgacaatttgagtaacagtcacc |
1104131 |
T |
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| Q |
218 |
gcgggtgctccactaaatccaactccattccaaggaccactcctatg |
264 |
Q |
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| T |
1104130 |
gcgggtgctccactaaatccaactccattccaaggaccactcctatg |
1104084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 103 - 252
Target Start/End: Complemental strand, 1087692 - 1087540
Alignment:
| Q |
103 |
tgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttg---tttcgaca |
199 |
Q |
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| T |
1087692 |
tgtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaaca |
1087593 |
T |
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| Q |
200 |
atttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaagg |
252 |
Q |
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| T |
1087592 |
attgaagtaacaatctccacaggtgctccactaaatccaactccattccaagg |
1087540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 261
Target Start/End: Complemental strand, 1072030 - 1071870
Alignment:
| Q |
104 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--at |
201 |
Q |
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| T |
1072030 |
gtttggttcaaataagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggtgttgtagctataacac |
1071931 |
T |
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| Q |
202 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcct |
261 |
Q |
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| T |
1071930 |
ttgacgtaataatctccataggtgctccactaaatccaactccattccaaggaccactcct |
1071870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 264
Target Start/End: Complemental strand, 1047217 - 1047054
Alignment:
| Q |
104 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--at |
201 |
Q |
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| T |
1047217 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacag |
1047118 |
T |
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| Q |
202 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
264 |
Q |
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| T |
1047117 |
ttgatgtaacaatctccataggcgctccactaaatccaactccattccaaggaccactcctatg |
1047054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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