View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_high_28 (Length: 250)
Name: NF3686_high_28
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 32724674 - 32724461
Alignment:
| Q |
1 |
tccgccatggtagtcgcgttattgcacggaagtggtagttgcactatttctggaattaattttaaaaaacagatagaaggaatgaacgtagtggtgaaag |
100 |
Q |
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| T |
32724674 |
tccgccatggtagtcgtgttattgcacggaagtggaagtcgaactatttctgaaattaattt-aaaaaacagatagaaggaatgaacgtagtggtgaaag |
32724576 |
T |
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| Q |
101 |
taaatgttatattatgaatattattcatgaatgaattttgaaagagaaagatattaaaattaaaatttagaaacatacttggcaatgtcttctttcctct |
200 |
Q |
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|||||||| ||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
32724575 |
taaatgttgtatcatgaatattattcatgaaagaattttgaaaga-aacgatattaaaattaaaatttagaaacatacttggcaatg-attttttcctct |
32724478 |
T |
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| Q |
201 |
tctgtaagtgatttcac |
217 |
Q |
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||||||||||||||||| |
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| T |
32724477 |
tctgtaagtgatttcac |
32724461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 4001937 - 4001817
Alignment:
| Q |
97 |
aaagtaaatgttatattatgaatattattcatgaatgaattttgaaagagaaagatattaaaattaaaatttagaaacatacttggcaatgtcttctttc |
196 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4001937 |
aaagtaaatgttgtattatgaatattattcatgaatgaattttgaaagagaaagatattaaaattaaaatttagaaacatacttggcattgtcttctttc |
4001838 |
T |
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| Q |
197 |
ctcttctgtaagtgatttcac |
217 |
Q |
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||||| ||||||||||||||| |
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| T |
4001837 |
ctcttatgtaagtgatttcac |
4001817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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