View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3686_high_4 (Length: 684)

Name: NF3686_high_4
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3686_high_4
NF3686_high_4
[»] chr5 (1 HSPs)
chr5 (19-676)||(14695633-14696283)
[»] scaffold0189 (2 HSPs)
scaffold0189 (257-375)||(10561-10680)
scaffold0189 (257-353)||(10636-10732)
[»] chr2 (2 HSPs)
chr2 (262-380)||(35401035-35401153)
chr2 (312-378)||(38832829-38832895)
[»] chr8 (2 HSPs)
chr8 (222-376)||(993954-994108)
chr8 (311-379)||(43752765-43752832)
[»] chr4 (2 HSPs)
chr4 (401-590)||(27758224-27758413)
chr4 (262-379)||(27758127-27758243)
[»] chr7 (1 HSPs)
chr7 (312-380)||(48473913-48473981)
[»] chr3 (2 HSPs)
chr3 (497-575)||(28984025-28984103)
chr3 (343-376)||(28983195-28983228)


Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 676
Target Start/End: Original strand, 14695633 - 14696283
Alignment:
Q  19 gctttacggttgaagatgtggcgtaattgaacaaacttttgttaccaaacatcatannnnnnnnnnnnnnnnngccttaccatgtcttttatcttttgtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||                  || ||||||||||||||||||||||||    
T  14695633 gctttacggttgaagatgtggcgtaattgaacaaacttttgttaccaaagatcat----gtttttttttttttgctttaccatgtcttttatcttttgtt 14695728  T
Q  119 aaatattgttgttctaacaccatagataatagcaggttgttaactcgtcaaatggagttgttggtgggttctttatactcttagtcactgaactgtgtag 218  Q
    | ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14695729 acatattgttgttctaacaccctagataatagcgggttgttaactcgtcaaatggagttgttggtgggttctttatactcttagtaactgaactgtgtag 14695828  T
Q  219 tccaatgatacaccctaattattttagagtgnnnnnnn-ggcattcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactctt 317  Q
    |||||||||||||| ||||||||||||||||        |||| ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||    
T  14695829 tccaatgatacaccttaattattttagagtgaagaaaaaggcactcttcgagtgagtgctaactcctagagagaaaatagatgaagaaaatggcactctt 14695928  T
Q  318 cgagtgagtgtaaactcctatagagaaaatagatgagaaattagggaagaaagtgaaaccttgnnnnnnnnnnnnnnnnnnggaaggaagaaagtgaaaa 417  Q
      ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||    
T  14695929 taagtgagtgtaaactcctatagaggaaatagatgagaaattagggaagaaagtgaaaccttgtttttttttttttttt---gaaggaagaaagtgaaaa 14696025  T
Q  418 cttgttattattcgacatatcagaattggttccccttacaacatatatcattactattggcacaacaacttgcattaatctaaggaaaagaaaataacgg 517  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| |    
T  14696026 cttgttattattcgacatatcagaattggttccccttacatcatatatcattactcttggcacaacaacttgcat-aatctaaagaaaagaaaataacag 14696124  T
Q  518 aatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaactaaacgtaaacaagtgtaactcttctttctcacaaaatctct 617  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  14696125 aatcttaaatttaggaaagaaaataaaccaaactataaaattaggaaagggaattaactaaatgtaatcaagtgtaactcttctttctcaaaaaatctct 14696224  T
Q  618 cgtctaactaggtgtatcatccaacatgtcgtaacaaatcaccctcaccatgtcattgc 676  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14696225 cgtctaactaggtgtatcatccaacatgtggtaacaaatcaccctcaccatgtcattgc 14696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 257 - 375
Target Start/End: Complemental strand, 10680 - 10561
Alignment:
Q  257 ggcattcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgagtgagtgtaaactccta-tagagaaaatagatgaga 355  Q
    |||| ||||||||| ||||  ||||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||  |||||||||||||||||    
T  10680 ggcactcttcgagtgagtgtaaactcctagagagaaaagagatgaagaaaatggcactcttcgagtaagtgtaaactcctaggagagaaaatagatgaga 10581  T
Q  356 aattagggaagaaagtgaaa 375  Q
    |||||||| |||||||||||    
T  10580 aattaggggagaaagtgaaa 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 257 - 353
Target Start/End: Complemental strand, 10732 - 10636
Alignment:
Q  257 ggcattcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgagtgagtgtaaactcctatagagaaaatagatga 353  Q
    |||| ||||||||| |||| |||||| | ||||||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||| ||||||    
T  10732 ggcactcttcgagtgagtgttaactcatggagagaaaagagatgaagaaaatggcactcttcgagtgagtgtaaactcctagagagaaaagagatga 10636  T

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Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 35401153 - 35401035
Alignment:
Q  262 tcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattag 361  Q
    ||||||||| ||||  ||||||||  |||| || ||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||     
T  35401153 tcttcgagtgagtgtcaactcctactgagacaagagatgaagaaaatggcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattat 35401054  T
Q  362 ggaagaaagtgaaaccttg 380  Q
    |||||||||||||||||||    
T  35401053 ggaagaaagtgaaaccttg 35401035  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 38832895 - 38832829
Alignment:
Q  312 actcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattagggaagaaagtgaaacct 378  Q
    ||||||||||||||||| || ||||||||| |||   || |||||||| | ||||||||||||||||    
T  38832895 actcttcgagtgagtgtcaaatcctatagaaaaacgtgaagagaaattggagaagaaagtgaaacct 38832829  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 222 - 376
Target Start/End: Complemental strand, 994108 - 993954
Alignment:
Q  222 aatgatacaccctaattattttagagtgnnnnnnnggcattcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgag 321  Q
    ||||||||||||||||||| ||||||||        ||| |||| |||| |||| |||||||| ||||||| | ||||||| ||||||  |||||||||     
T  994108 aatgatacaccctaattatcttagagtgaagaaaaagcactctttgagtgagtgttaactccttgagagaacagagatgaaaaaaatggcactcttcgaa 994009  T
Q  322 tgagtgtaaactcctatagagaaaatagatgagaaattagggaagaaagtgaaac 376  Q
    || ||||||||||||| |||||||  ||||||||||||| |||||||||||||||    
T  994008 tgcgtgtaaactcctagagagaaatcagatgagaaattaaggaagaaagtgaaac 993954  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 311 - 379
Target Start/End: Complemental strand, 43752832 - 43752765
Alignment:
Q  311 gactcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattagggaagaaagtgaaacctt 379  Q
    |||||||||||||||||| |||||||| ||||||| | || ||||| || | ||||||| |||||||||    
T  43752832 gactcttcgagtgagtgtcaactcctagagagaaagt-gaagagaatttggagaagaaactgaaacctt 43752765  T

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Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 401 - 590
Target Start/End: Original strand, 27758224 - 27758413
Alignment:
Q  401 aaggaagaaagtgaaaacttgttattattcgacatatcagaattggttcccc-ttacaacatatatcattactattggcacaacaacttgcattaatcta 499  Q
    |||||||||||||||| ||| ||||||||| ||||||| |||||||||| |  ||||| |||||||  | | | || ||| |||||||||||| ||||||    
T  27758224 aaggaagaaagtgaaaccttattattattcaacatatctgaattggttcactattacatcatatatagtcaatcttagcataacaacttgcat-aatcta 27758322  T
Q  500 aggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaactaaacgtaaacaagt 590  Q
    || ||| | |||||||  |||| ||||||||  ||||||||||||| |||| |||||||||| ||| |||| ||||| || |||| |||||    
T  27758323 agaaaagggaaataacataatcataaatttagaaaaggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagt 27758413  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 262 - 379
Target Start/End: Original strand, 27758127 - 27758243
Alignment:
Q  262 tcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattag 361  Q
    ||||||||| ||||   |||||||||||||||| ||||||||||| | | ||| ||||||||| ||||||||  || ||||||||||||||| ||||||     
T  27758127 tcttcgagtgagtgtcgactcctagagagaaaagagatgaagaaa-taacacttttcgagtgaatgtaaacttttagagagaaaatagatgacaaattaa 27758225  T
Q  362 ggaagaaagtgaaacctt 379  Q
    ||||||||||||||||||    
T  27758226 ggaagaaagtgaaacctt 27758243  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 48473981 - 48473913
Alignment:
Q  312 actcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattagggaagaaagtgaaaccttg 380  Q
    |||||||||||||||||  ||||||| |||||||| |||||| ||||| |||||||||||||| |||||    
T  48473981 actcttcgagtgagtgtcgactcctagagagaaaagagatgaaaaattggggaagaaagtgaacccttg 48473913  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 575
Target Start/End: Original strand, 28984025 - 28984103
Alignment:
Q  497 ctaaggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaac 575  Q
    ||||||||| |||||||||  |||| ||||| || ||||||||||||||  |||  ||||||||| |||||||| ||||    
T  28984025 ctaaggaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataac 28984103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 28983195 - 28983228
Alignment:
Q  343 aaaatagatgagaaattagggaagaaagtgaaac 376  Q
    ||||||||||||||||||||| ||||||||||||    
T  28983195 aaaatagatgagaaattaggggagaaagtgaaac 28983228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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