View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_high_9 (Length: 403)
Name: NF3686_high_9
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 34686002 - 34685629
Alignment:
| Q |
18 |
tatactatactatactatactatagcttaatttgacataaaattacatttgcagtgattaaaacaattagattagataatacaacttcctaagtagattt |
117 |
Q |
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| T |
34686002 |
tatactatactatactatactatagcttaatttgacataaaattacatttgcagtgattaaaacaattagattagataatacaacttcctaagtagattt |
34685903 |
T |
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| Q |
118 |
cttgtcgaaatgtttatgtatgtattcatatttatttattttgcagcttttgtgtggttgaagtgtgagggaaatgtggaagactgtgaaagcttcctta |
217 |
Q |
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| T |
34685902 |
cttgtcgaaatgtttatgtatgtattcat--ttatttattttgcagcttttgtgtggttgaagtgtgagggaaatgtggaagactgtgaaagcttcctta |
34685805 |
T |
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| Q |
218 |
gagcacacaacatcataacgagaagtggaaaacactttggggttagcccaaaatatgtaagaattagcttgttggatactgatgaaaattttactcaatt |
317 |
Q |
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| T |
34685804 |
gagcacacaacatcataacgagaagtggaaaacactttggggttagcccaaaatatgtaagaattagcttgttggatactgatgaaaattttactcaatt |
34685705 |
T |
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| Q |
318 |
tctagacagattatctaccatacagtctttgtaatgaaaatttgttgctgctggtaataatatagttgtgtctgtg |
393 |
Q |
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| T |
34685704 |
tctagacagattatctaccatacagtctttgtaatgaaaatttgttgctgctggtaataatatagttgtgtgtgtg |
34685629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 43611374 - 43611302
Alignment:
| Q |
238 |
agaagtggaaaacactttggggttagcccaaaatatgtaagaattagcttgttggatactgatgaaaatttta |
310 |
Q |
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| T |
43611374 |
agaagtggtgaacaatttggggcgagcccaaaatatgtaagaattagcatgttggatacagatgaacatttta |
43611302 |
T |
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