View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3686_low_1 (Length: 1266)

Name: NF3686_low_1
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3686_low_1
NF3686_low_1
[»] chr7 (9 HSPs)
chr7 (119-992)||(29697455-29698331)
chr7 (1036-1260)||(29698352-29698577)
chr7 (103-336)||(29332932-29333157)
chr7 (334-490)||(28960411-28960564)
chr7 (1214-1260)||(14267103-14267149)
chr7 (17-52)||(29697377-29697412)
chr7 (1218-1260)||(11519311-11519353)
chr7 (901-939)||(28960881-28960919)
chr7 (831-868)||(19793552-19793589)
[»] chr3 (7 HSPs)
chr3 (1046-1173)||(50338835-50338959)
chr3 (937-992)||(50338742-50338797)
chr3 (341-439)||(34095973-34096067)
chr3 (499-615)||(31229146-31229262)
chr3 (662-714)||(41137460-41137512)
chr3 (1219-1260)||(23295014-23295055)
chr3 (838-867)||(19981197-19981226)
[»] chr4 (2 HSPs)
chr4 (364-439)||(29785270-29785341)
chr4 (640-714)||(29785845-29785923)
[»] chr6 (3 HSPs)
chr6 (1217-1260)||(23576488-23576531)
chr6 (826-868)||(12808900-12808942)
chr6 (831-868)||(35110085-35110122)
[»] chr8 (1 HSPs)
chr8 (131-180)||(40033287-40033336)


Alignment Details
Target: chr7 (Bit Score: 788; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 119 - 992
Target Start/End: Original strand, 29697455 - 29698331
Alignment:
Q  119 ggttgaaataatgaaatgtgaactcaacttagcatagtattcaagagaacaagtagaaatatgaataatatgtgacacattaaagcagctggatcactct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29697455 ggttgaaataatgaaatgtgaactcaacttagcatagtattcaagagaacaagtagaaatatgaataatatgtgacacattaaagcagctggatcactct 29697554  T
Q  219 aggatgctttgaatatgtttatgtgaattataagttactgattttgcttctttttcatgtacctacctttctgcaaagggaatgagatgttcaacatcaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29697555 aggatgctttgaatatgtttatgtgaattataagttactgattttgcttctttttcatgtacctacctttctgcaaagggaatgagatgttcaacatcaa 29697654  T
Q  319 tcgaattgatattcaacattagttttagagatctttatatcaagcataagctaatttttgtttatcaaaattactttattaaataattttctctcatcta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29697655 tcgaattgatattcaacattagttttagagatctttatatcaagcataagctaatttttgtttatcaaaattactttattaaataattttctctcatcta 29697754  T
Q  419 ctaacataattaaaattactannnnnnn-attagaaaactatttctctcaagtaattgcatgttggctatatacttattccttaaaagtgaataagtgag 517  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29697755 ctaacataattaaaattactattttttttattagaaaactatttctctcaagtaattgcatgttggctatatacttattccttaaaagtgaataagtgag 29697854  T
Q  518 aaatttgaggttcgaactctggctccgacacattgcaatacattatctcttccaattaaacaatttcaacttatatacatttcttatgatagtcaaaatg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29697855 aaatttgaggttcgaactctggctccgacacattgcaatacattatctcttccaattaaacaatttcaacttatatacatttcttatgatagtcaaaatg 29697954  T
Q  618 cgaccctttcatcttatacatcgaatattgaataatttgatgacttagaatagataaattataacaattattttattaaagttactttttattaattnnn 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  29697955 cgaccctttcatcttatacatcgaatattgaataatttgatgacttagaatagataaattataacaattattttattaaagttactttttattaattaaa 29698054  T
Q  718 nnnnctcaaaatcaattttgattttacaaaaattattttcc--taccatcttttttacgaaaacttagtttgggccatttaatttgcatcattgaaacta 815  Q
        ||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  29698055 aaaactcaaaatcaattttgattttacaaaaattagtttcctataccatcttttttacgaaaacttagtttgtgccatttaacttgcatcattgaaacta 29698154  T
Q  816 caataaatcatttttgtgtttggggttcgaatctcagaccttacatatattatcatctttatgctcacgaggacgcaataaatcatttatataaactagt 915  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29698155 caataaatcatttttgtgttcggggttcgaacctcagactttacatatattattatctttatgctcacgaggacgcaataaatcatttatataaactagt 29698254  T
Q  916 ttaatataataaatagaaagtaaatatttattacttattcctactttattttatttttctaatgatgcactctgtgt 992  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29698255 ttaatataataaatagaaagtaaatatttattacttattcctactttattttatttttctaatgatgcactctgtgt 29698331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 1036 - 1260
Target Start/End: Original strand, 29698352 - 29698577
Alignment:
Q  1036 tcgaaacctctaaaaactatgatgcttctctcacatgttactannnnnnn-cattttcattgcttaaataataaagtatcgtgttgtgcactttgtgttc 1134  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29698352 tcgaaacctctaaaaactatgatgcttctctcacatgttactattttttttcattttcattgcttaaataataaagtatcgtgttgtgcactttgtgttc 29698451  T
Q  1135 cagtgaataaattaaaaattaatttctatgaatttaaaaattgggacggtgtcaaggtatgctatttgctaaacatgtgttgaagataatattgcttatt 1234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  29698452 cagtgaataaattaaaaattaatttctatgaatttaaaaattgggacggtgtcaaactatgctgtttgctaaacatgtgttgaagataatattgcttatt 29698551  T
Q  1235 gctttagtttatgttttgatgatgtc 1260  Q
    ||||||||||||||||||||||||||    
T  29698552 gctttagtttatgttttgatgatgtc 29698577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 103 - 336
Target Start/End: Complemental strand, 29333157 - 29332932
Alignment:
Q  103 tattgtattgagtgtgggttgaaataatgaaatgtgaactcaacttagcatagtattcaagagaacaagtagaaatatgaataatatgtgacacattaaa 202  Q
    |||||||||||||||| || |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||  ||    
T  29333157 tattgtattgagtgtgtgtggaaataatgaaatgtgaactcagcttaccatagtatccaagagaacaagtagaaatatgaataatatgtgaca-at--aa 29333061  T
Q  203 gcagctggatcactctaggatgctttgaatatgtttatgtgaattataagttactgattttgcttctttttcatgtacctacctttctgcaaagggaatg 302  Q
    |||||||||| ||| |||||| ||| |||||||||||| |||||||||  ||||||||||||||||||||||||||||||    |||| ||| |||||||    
T  29333060 gcagctggatgactgtaggatacttcgaatatgtttatctgaattatagtttactgattttgcttctttttcatgtacct----ttcttcaa-gggaatg 29332966  T
Q  303 agatgttcaacatcaatcgaattgatattcaaca 336  Q
    |||||||||||||||||| |||||| | ||||||    
T  29332965 agatgttcaacatcaatctaattgaaaatcaaca 29332932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 334 - 490
Target Start/End: Original strand, 28960411 - 28960564
Alignment:
Q  334 acattagttttagagatctttatatcaagcataagctaatttttgtttatcaaaattactttattaaataattttctctcatctactaacataattaaaa 433  Q
    ||||||||||||||  |||||| ||||||||||||| ||||| | ||| ||||||||||||||  ||||||  ||||||||||||   ||||||||||||    
T  28960411 acattagttttaga--tctttacatcaagcataagccaatttctatttgtcaaaattactttaacaaataaccttctctcatcta--gacataattaaaa 28960506  T
Q  434 ttact-annnnnnnattagaaaactatttctctcaagtaattgcatgttggctatata 490  Q
    ||||| |       |||||||||  | ||||||||| |||||||||||||||||||||    
T  28960507 ttactaatttttttattagaaaatcacttctctcaaataattgcatgttggctatata 28960564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1214 - 1260
Target Start/End: Original strand, 14267103 - 14267149
Alignment:
Q  1214 ttgaagataatattgcttattgctttagtttatgttttgatgatgtc 1260  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14267103 ttgaagataatattgcttattcctttagtttatgtttttatgatgtc 14267149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 29697377 - 29697412
Alignment:
Q  17 atcaattttatttgttgatcacattagctagtgtgt 52  Q
    ||||||||||||||||||||||||||||| ||||||    
T  29697377 atcaattttatttgttgatcacattagctggtgtgt 29697412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1218 - 1260
Target Start/End: Complemental strand, 11519353 - 11519311
Alignment:
Q  1218 agataatattgcttattgctttagtttatgttttgatgatgtc 1260  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||    
T  11519353 agataatattggttactgctttagtttatgttttgacgatgtc 11519311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 901 - 939
Target Start/End: Original strand, 28960881 - 28960919
Alignment:
Q  901 tttatataaactagtttaatataataaatagaaagtaaa 939  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  28960881 tttatataaagtagtataatataataaatagaaagtaaa 28960919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 831 - 868
Target Start/End: Complemental strand, 19793589 - 19793552
Alignment:
Q  831 gtgtttggggttcgaatctcagaccttacatatattat 868  Q
    |||||||||||||||| | |||||||||||||||||||    
T  19793589 gtgtttggggttcgaaccccagaccttacatatattat 19793552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 4e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 1046 - 1173
Target Start/End: Original strand, 50338835 - 50338959
Alignment:
Q  1046 taaaaactatgatgcttctctcacatgttactannnnnnncattttcattgcttaaataataaagtatcgtgttgtgcactttgtgttccagtgaataaa 1145  Q
    ||||||||| |||||||||||||||||||||||       ||||| |||| |||||||||||||||||||||||||  |||| ||||||||||||||||     
T  50338835 taaaaactacgatgcttctctcacatgttactattttc--catttccatttcttaaataataaagtatcgtgttgtttactt-gtgttccagtgaataag 50338931  T
Q  1146 ttaaaaattaatttctatgaatttaaaa 1173  Q
    ||||||||||||||| | ||||||||||    
T  50338932 ttaaaaattaatttccacgaatttaaaa 50338959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 937 - 992
Target Start/End: Original strand, 50338742 - 50338797
Alignment:
Q  937 aaatatttattacttattcctactttattttatttttctaatgatgcactctgtgt 992  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  50338742 aaatatttattacttattcctactttattttatttttctaatgatgtactcagtgt 50338797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 341 - 439
Target Start/End: Complemental strand, 34096067 - 34095973
Alignment:
Q  341 ttttagagatctttatatcaagcataagctaatttttgtttatcaaaattactttattaaataattttctctcatctactaacataattaaaattacta 439  Q
    ||||| ||||||||||||| || | |||||||||| ||||| |||||||||  |||    |||||||||| ||||||||| ||||||||||||||||||    
T  34096067 ttttaaagatctttatatcgagtacaagctaatttctgtttgtcaaaattatgtta----ataattttctttcatctacttacataattaaaattacta 34095973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 499 - 615
Target Start/End: Original strand, 31229146 - 31229262
Alignment:
Q  499 ttaaaagtgaataagtgagaaatttgaggttcgaactctggctccgacacattgcaatacattatctcttccaattaaacaatttcaacttatatacatt 598  Q
    |||||||||||||||||| ||||| || |||| ||||| | ||   |||||||| |||  ||| || |||| ||||||||| ||||||||||||||||||    
T  31229146 ttaaaagtgaataagtgaaaaattcgatgttcaaactccgtcttatacacattgtaatgtattgtcacttcaaattaaacactttcaacttatatacatt 31229245  T
Q  599 tcttatgatagtcaaaa 615  Q
      || ||||||||||||    
T  31229246 gtttgtgatagtcaaaa 31229262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 662 - 714
Target Start/End: Complemental strand, 41137512 - 41137460
Alignment:
Q  662 ttagaatagataaattataacaattattttattaaagttactttttattaatt 714  Q
    |||||||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  41137512 ttagaataaataaattatatcaattattttatcaaagttactttttattaatt 41137460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1219 - 1260
Target Start/End: Original strand, 23295014 - 23295055
Alignment:
Q  1219 gataatattgcttattgctttagtttatgttttgatgatgtc 1260  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  23295014 gataatattgcttattgctttagtttatattttgatgatgtc 23295055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 838 - 867
Target Start/End: Original strand, 19981197 - 19981226
Alignment:
Q  838 gggttcgaatctcagaccttacatatatta 867  Q
    ||||||||||||||||||||||||||||||    
T  19981197 gggttcgaatctcagaccttacatatatta 19981226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 364 - 439
Target Start/End: Original strand, 29785270 - 29785341
Alignment:
Q  364 ataagctaatttttgtttatcaaaattactttattaaataattttctctcatctactaacataattaaaattacta 439  Q
    |||||||||||||||||| ||||||||||||||    ||| |||||||||||||||| ||||||||||||||||||    
T  29785270 ataagctaatttttgtttgtcaaaattacttta----atatttttctctcatctactgacataattaaaattacta 29785341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 640 - 714
Target Start/End: Original strand, 29785845 - 29785923
Alignment:
Q  640 gaatattgaataatttgatgac----ttagaatagataaattataacaattattttattaaagttactttttattaatt 714  Q
    |||||||||||||||||||||     |||||||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  29785845 gaatattgaataatttgatgaactggttagaataaataaattatatcaattattttatcaaagttactttttattaatt 29785923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1217 - 1260
Target Start/End: Complemental strand, 23576531 - 23576488
Alignment:
Q  1217 aagataatattgcttattgctttagtttatgttttgatgatgtc 1260  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  23576531 aagataatattgctcattgctttagtttatgttttgatgatgtc 23576488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 826 - 868
Target Start/End: Complemental strand, 12808942 - 12808900
Alignment:
Q  826 tttttgtgtttggggttcgaatctcagaccttacatatattat 868  Q
    ||||||||||||||||||||| | |||||||| ||||||||||    
T  12808942 tttttgtgtttggggttcgaaccccagaccttgcatatattat 12808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 831 - 868
Target Start/End: Complemental strand, 35110122 - 35110085
Alignment:
Q  831 gtgtttggggttcgaatctcagaccttacatatattat 868  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  35110122 gtgtttggggttcgaacctcaaaccttacatatattat 35110085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 40033336 - 40033287
Alignment:
Q  131 gaaatgtgaactcaacttagcatagtattcaagagaacaagtagaaatat 180  Q
    ||||||| |||||| |||| |||||||| ||||| |||||||||||||||    
T  40033336 gaaatgtaaactcagcttaacatagtatccaagaaaacaagtagaaatat 40033287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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