View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_low_11 (Length: 382)
Name: NF3686_low_11
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 364
Target Start/End: Complemental strand, 4336634 - 4336279
Alignment:
| Q |
9 |
acatcatcaacttatcaaatctatcacgttactctttctatttctttctctctcaaggtattgataagaagtttaagtgtccaccaaacactttcctaaa |
108 |
Q |
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| T |
4336634 |
acatcatcaacttatcaaatctatcacgttactctttctatttctttctctctcaaggtattgataagaagtttaagtgtccaccaaacactttcctaaa |
4336535 |
T |
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| Q |
109 |
aattataatcttttgaccacctggaaaaattctgaagtaattataggaaaaagtattgttgaatattttagtattgttacgcacagaaatatttgtttgg |
208 |
Q |
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| T |
4336534 |
aattataatcttttgaccacctggaaaaattctgaagtaattataggaaaaagtattgttgaatattttagtattgttacgcacagaaatatttgcttgg |
4336435 |
T |
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| Q |
209 |
gttcttaaaaaagagacgtgcagcttcaacttaccgtatcaaccagataaaagcaaggtcatggtgcttttcatttgatattttagtagttctaccaaga |
308 |
Q |
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| T |
4336434 |
gttcttaaaaaagagacgtgcagcttcaacttaccgtatcaaccagataaaagcaaggtcatggtgcttttcatttgatattttagtagttctaccaaga |
4336335 |
T |
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| Q |
309 |
tactctttttccaacacaccatctcttaattgagcgaaatcaatggaggtcacacg |
364 |
Q |
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| T |
4336334 |
tactctctttccaacacaccatctcttaattgagcgaaatcaatggaggtcacacg |
4336279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 4362047 - 4362000
Alignment:
| Q |
280 |
catttgatattttagtagttctaccaagatactctttttccaacacac |
327 |
Q |
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| T |
4362047 |
catttgatattttggtagttctaccaagatagtctctttccaacacac |
4362000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 4123265 - 4123346
Alignment:
| Q |
79 |
gtttaagtgtccaccaaacactttcctaaaaattataatcttttgaccacctggaaaaattctgaagtaattataggaaaaa |
160 |
Q |
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| T |
4123265 |
gtttaggtgtctaccaaacattttcctaaaaattaaaattatttgactacctaaaaaaaatttgaagtaatgataggaaaaa |
4123346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 33180054 - 33180016
Alignment:
| Q |
27 |
atctatcacgttactctttctatttctttctctctcaag |
65 |
Q |
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| T |
33180054 |
atctatcacattactctctctatttctttctctctcaag |
33180016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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