View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_low_13 (Length: 380)
Name: NF3686_low_13
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 19175275 - 19175542
Alignment:
| Q |
1 |
cacaacattgacaccgacacatgacataaataataatttattgtaattatatgtgttgttataggacactaaacaatctttcaatacgaagtgtctctac |
100 |
Q |
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| T |
19175275 |
cacaacattgacactgacacatgacacaaataataatttattgtaattatatgcgttgttgtaggacactaaacaatctttcaatacgaagtgtctctac |
19175374 |
T |
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| Q |
101 |
taaacacagatacaaaggacaaagtatattaattggtctaaaaaagcaataaaatattttgagaatataaacttttaaaccataaaattctttcaacact |
200 |
Q |
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| T |
19175375 |
tacatacacatacaaaggatatagtatattaattggtctaaaaaagcaataaaatattttgagaatataaactttttaaccataaaattctttcaacact |
19175474 |
T |
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| Q |
201 |
actgcatagagtttagagactggtctcatggtctccttatataaatcaaatcatagtttttaattgta |
268 |
Q |
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| T |
19175475 |
actccatagagtttagagactggtctcatggtctccttatacaaatcaaatcatagttcttaattgta |
19175542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 19175579 - 19175675
Alignment:
| Q |
269 |
caaaggtcttgaattgacattacaagagcaattgtggccgcatcggtcacatttgcccacatcttactacaatataaagattcacaacatcttgacc |
365 |
Q |
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| T |
19175579 |
caaaggtcttgaagtgacatcacaagagcaattctggccgcatcgatcacatttgcccacatcttactacaatataaagattcacaacgtcttgacc |
19175675 |
T |
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