View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_low_18 (Length: 346)
Name: NF3686_low_18
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_18 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 31073779 - 31073454
Alignment:
| Q |
1 |
cctaatccaggaaaaagaaaacaagaataataaaactatattaaagagtattatgagaatcgtccctag----atcttgtattagaaataaaacatatgt |
96 |
Q |
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| T |
31073779 |
cctaatccaggaaaaagaaaacaagaataataaaactatattaaagagtattatgagaatcgtccctagctagatcttgtattagaaataaaacatatgt |
31073680 |
T |
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| Q |
97 |
acgttctatttttattcannnnnnnnatatattttaggacgacttaagtaaaccttgattataaccaatatagtgcattgccatgagtggtagatatttg |
196 |
Q |
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| T |
31073679 |
acgttctatttttattcattttttttatatattttaggacgacttaagtaaaccttgat-------aatatagtgcattgccatgagtggtagatatttg |
31073587 |
T |
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| Q |
197 |
gatcctttaatcatttggttcagagtttgattcatgtatgatgcgtggaaaaatatttgttaggatatgtcaatttttcaaatggatctcaatacttcga |
296 |
Q |
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| T |
31073586 |
gatcctttaattatttggttcagagtttgattcatgtatgatgcgtggaaaaatatttgttaggatatgtcaacttttcaaatggatctcaatacttcga |
31073487 |
T |
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| Q |
297 |
ggggattaatttttacggttgcgtgcggaagat |
329 |
Q |
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| T |
31073486 |
ggggattaatttttacggttgcgtgcggaagat |
31073454 |
T |
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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 15576 - 15505
Alignment:
| Q |
158 |
taaccaatatagtgcattgccatgagtggtagatatttggatcctttaatcatttggttcagagtttgattcatg |
232 |
Q |
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| T |
15576 |
taaccaatatagtg---tgacataagtggtagatacttgtgtcccttaattatttggttcagagttcgattcatg |
15505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 20711737 - 20711666
Alignment:
| Q |
158 |
taaccaatatagtgcattgccatgagtggtagatatttggatcctttaatcatttggttcagagtttgattcatg |
232 |
Q |
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|||||||||||||| || ||| ||||||||||| ||| ||| ||||| ||||||||||||||| |||||||| |
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| T |
20711737 |
taaccaatatagtg---tgacataagtggtagatacttgtgtcccttaattatttggttcagagttcgattcatg |
20711666 |
T |
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