View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3686_low_26 (Length: 310)
Name: NF3686_low_26
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 4314827 - 4314527
Alignment:
| Q |
2 |
tcaaggttacaatggcaatcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctgg |
101 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314827 |
tcaaggttacaaaggcaatcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctgg |
4314728 |
T |
|
| Q |
102 |
aaagaagttcttaattgtcttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaa |
201 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314727 |
aaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaa |
4314628 |
T |
|
| Q |
202 |
attcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtctgtgt |
301 |
Q |
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|
||||||||||||||||| | |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4314627 |
attcttgtaacaacccgaagtaaaaaagttgcttgtatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgt |
4314528 |
T |
|
| Q |
302 |
t |
302 |
Q |
| |
|
| |
|
|
| T |
4314527 |
t |
4314527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 4305966 - 4305665
Alignment:
| Q |
1 |
ttcaaggttacaatggcaatcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctg |
100 |
Q |
| |
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||||| ||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4305966 |
ttcaaagttacaaaggcaatcatggaggcagttactagaagtgcttgtaatataaataatatagagttgcttcatctagatttgaaggaaaaactggccg |
4305867 |
T |
|
| Q |
101 |
gaaagaagttcttaattgtcttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||| || |||||||| |||||||| | | || |||||||| |
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| T |
4305866 |
gaaagaagttcttaattgttttggatgacgtttggactgaggattatgatgcttggaaatcccttttaaggcctcttcagtacagtgacaaaggaagtaa |
4305767 |
T |
|
| Q |
201 |
aattcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtctgtg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4305766 |
aattcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtctgtg |
4305667 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
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|
| T |
4305666 |
tt |
4305665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 64 - 302
Target Start/End: Original strand, 4253720 - 4253959
Alignment:
| Q |
64 |
gagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgtcttggatgatgtttggaccgaggattatgacgcttggaattcac |
163 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||| | |
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| T |
4253720 |
gagttgcttcatcgtgatttgaaggaaaaactgactggaaaaaagttcttaattgttttggatgatgtatggaccgaggattatgacagctggaattctc |
4253819 |
T |
|
| Q |
164 |
ttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttttcaaggtt-act |
262 |
Q |
| |
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||||||| |||||||| | || | | ||||| |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||| | | |
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|
| T |
4253820 |
ttttaaggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaagttgcttctatggtccaaacttttcaaggttaatt |
4253919 |
T |
|
| Q |
263 |
ctcttgagcaattgtctgatgaagattgttggtctgtgtt |
302 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| ||||| |
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| T |
4253920 |
ctcttgatgaattatctgatgaagattgttggtcggtgtt |
4253959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 52 - 302
Target Start/End: Original strand, 4246590 - 4246840
Alignment:
| Q |
52 |
ataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgtcttggatgatgtttggaccgaggattatgacg |
151 |
Q |
| |
|
|||||||| | |||||| |||||| |||||||||||||||||| ||||||| |||||||| ||||| ||||| |||||||||| | |||||||| || |
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|
| T |
4246590 |
ataaataacaaagagttacttcattgtgatttgaaggaaaaactgactggaaaaaagttcttgattgttttggacgatgtttggatcaaggattataaca |
4246689 |
T |
|
| Q |
152 |
cttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttt |
251 |
Q |
| |
|
||||||||| ||| | | |||||||| | || | | |||||| ||||||||||||||||| |||| | | ||||||||||||||| | |||||||| |
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|
| T |
4246690 |
gttggaattctcttatgatgcctcttcaatacggagctaagggaagcaaaattcttgtaacaacgcgtagtgataaagttgcttctatggtccaaacttt |
4246789 |
T |
|
| Q |
252 |
tcaaggttactctcttgagcaattgtctgatgaagattgttggtctgtgtt |
302 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
4246790 |
tcaaggttattctcttgagaaattgtctgatgaagattgttggtcagtgtt |
4246840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 41933101 - 41933402
Alignment:
| Q |
1 |
ttcaaggttacaatggcaatcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
41933101 |
ttcaaggttacaaaggcaatcatggaggcagttactagaagtgcttgtaatataaataatatagagttgcttcatctagatttgaaggaaaaactgtccg |
41933200 |
T |
|
| Q |
101 |
gaaagaagttcttaattgtcttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaa |
200 |
Q |
| |
|
||||||||||||||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||||| |||||||| |||| |||| ||||||||| |
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|
| T |
41933201 |
gaaagaagttcttaattgttttagatgatttctggaccgaggattatgatgcttggaattctcttttaaggcctcttcaatatggtaccaagggaagtaa |
41933300 |
T |
|
| Q |
201 |
aattcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtctgtg |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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|
| T |
41933301 |
aattcttgtaacaacccatattaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgaagaagattgttggtccgtg |
41933400 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
41933401 |
tt |
41933402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 296
Target Start/End: Complemental strand, 34802834 - 34802609
Alignment:
| Q |
71 |
ttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgtcttggatgatgtttggaccgaggattatgacgcttggaattcacttttaag |
170 |
Q |
| |
|
|||||| |||||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||| |
|
|
| T |
34802834 |
ttcatcaagatttgaaggagaagttggcgggaaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataag |
34802735 |
T |
|
| Q |
171 |
acctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttttcaaggttactctcttgag |
270 |
Q |
| |
|
||| |||| || || | |||||||||||||||||||||||| ||||| |||| |||||| ||||| | |||||||||||| |||| |||| || |
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|
| T |
34802734 |
gccttttcaatgcggaactaaaggaagtaaaattcttgtaacaacctgtattgaaaatgttgctactatggtccaaacttttcaaccttaccatcttaag |
34802635 |
T |
|
| Q |
271 |
caattgtctgatgaagattgttggtc |
296 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34802634 |
atattgtctgatgaagattgttggtc |
34802609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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