View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3686_low_3 (Length: 896)
Name: NF3686_low_3
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 694; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 19 - 752
Target Start/End: Complemental strand, 9127422 - 9126689
Alignment:
| Q |
19 |
acacgtataacacgacaagcttcagcgtactttgtgataatatgggcagcggaggagaaagtgaatctttcaaacacgtgtacattaatacataaattcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9127422 |
acacgtataacacgacaagcttcagcgtactttgtgataatatgggcagcggaggagaaagtgaatctttcaaacacgtgtacattaatacataaattcg |
9127323 |
T |
|
| Q |
119 |
atgaagtatcagccgacgaagaataacatatgtaactgcagattgaaaacatttctttacctaactcctatattctctgagaaaatgaataactgttttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9127322 |
atgaagtatcagccgacgaagaataaaatatgtaactgcagattgaaaacatttctttacctaactcctatattctctgagaaaatgaataattgttttg |
9127223 |
T |
|
| Q |
219 |
cttttagtcccttttggtcaaactaaggggttgagtttgcatatgtaatggaattgtttagtaatatattagactctacataattttgtgcatatctcat |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9127222 |
cttttagtccctttgggtcaaactaaggggttgagtttgcatatgtaatggaattgtttagtaatatattagactctacataattttgtgcatatctcat |
9127123 |
T |
|
| Q |
319 |
tctgcactataaaatttgtttgaaattttgaattgagaaaatatattgtaatcaatgtcattgggggtattgcaccttaagaaatggttataagaacttg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9127122 |
tctgcactataaaatttgtttgaaattttgacttgagaaaatatattgtaatcaatgtcattgggggtattgcaccttaagaagtggttataagaacttg |
9127023 |
T |
|
| Q |
419 |
ttaagaatcataattttacatttgaaaatatgatttctgcaattaaaataaatagccagaactatctgttgatctatcaattatacaaacaattgcatca |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9127022 |
ttaagaatcataattttacatttgaaaatatgatttctgcaattaaaataaatagccagaacaatctgttgatctatcaattatacagacaattgcatca |
9126923 |
T |
|
| Q |
519 |
attatcaatgccattaaagcatacagattaagaaatctaggactctagctgtttaacattttcgccgtttaagccaaggttgtgtagtatcttgtgacct |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9126922 |
attatcaatgccattaaagcatacagattaagaaatctaggactctagctgtttaacattttcgccgtttaagccaaggttgtatagtatcttgtgacct |
9126823 |
T |
|
| Q |
619 |
aaggaatccactttagacaaatgcgaagcgaagaattatgtatgcattgattattttccccaccatcatcttcaagtcacatgaattcataaaaaggact |
718 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9126822 |
aaggaatccactttagccaaatgcgaagcgaagaattatgtatgcattgattattttccccaccatcatcttcaagtcacatgaattcataaaaagaact |
9126723 |
T |
|
| Q |
719 |
attttttgggaactaagccatataatatttgata |
752 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9126722 |
attttttgggaactaagccatataatatttgata |
9126689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 744 - 881
Target Start/End: Complemental strand, 9126638 - 9126501
Alignment:
| Q |
744 |
tatttgataagattcatcagttttagnnnnnnngaaagagatgaatagcagggaacatagcaccaaaaatgtgaaaacgacgaaaacatttcataaagag |
843 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9126638 |
tatttgataagattcatcagttttagaaaaaaagaaagagatgaatagcagggaacatagcaccaaaaatgtgaaaacgacgaaaacatttcataaagag |
9126539 |
T |
|
| Q |
844 |
ttgcagcagcccttttttgaaaacctgagcgctctaag |
881 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9126538 |
ttgcagcagcccttttttgaaaatctgagcgctctaag |
9126501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 9169817 - 9169972
Alignment:
| Q |
19 |
acacgtataacacgacaagcttcagcgtactttgtgataatatgggcagcggaggagaaa-gtgaatctttcaaacacgtg-tacattaatacataaatt |
116 |
Q |
| |
|
|||||||||||||||| |||||||| ||| || |||||||| ||| |||||| |||||| ||| ||||||||||||| || || |||| || |||||| |
|
|
| T |
9169817 |
acacgtataacacgacgagcttcagtgtagttcttgataatacgggtagcggatgagaaaagtggatctttcaaacacatgctagattaggacttaaatt |
9169916 |
T |
|
| Q |
117 |
cgatgaagtatcagccgacgaagaataacatatgtaactgcagattgaaaacattt |
172 |
Q |
| |
|
||||| | |||||||| | ||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
9169917 |
cgatggaatatcagccaatgaagaataaaatatgtaactgcagattgaaaatattt |
9169972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 9173162 - 9173291
Alignment:
| Q |
125 |
tatcagccgacgaagaataacatatgtaactgcagattgaaaacatttctttacctaactcctatattctctgagaaaatgaataactgttttgctttta |
224 |
Q |
| |
|
|||||| ||| |||||| || ||| |||||||||||| |||| |||||| |||| | ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9173162 |
tatcagacgatgaagaaaaaaataagtaactgcagatcgaaa-catttccttacacagctc---tattctctgagaaaatgaatatttgttttgctttta |
9173257 |
T |
|
| Q |
225 |
gtcccttttggtcaaactaaggggttgagtttgca |
259 |
Q |
| |
|
||||| |||||||||||||| || || |||||||| |
|
|
| T |
9173258 |
gtccc-tttggtcaaactaaaggtttaagtttgca |
9173291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 259
Target Start/End: Complemental strand, 9157248 - 9157119
Alignment:
| Q |
125 |
tatcagccgacgaagaataacatatgtaactgcagattgaaaacatttctttacctaactcctatattctctgagaaaatgaataactgttttgctttta |
224 |
Q |
| |
|
|||||| ||| |||||| || ||| |||||||||||| |||| |||||| |||| | ||| || |||||||||||||||||| ||||||||||||| |
|
|
| T |
9157248 |
tatcagacgatgaagaaaaaaataagtaactgcagatcgaaa-catttccttacacagctc---tactctctgagaaaatgaatatttgttttgctttta |
9157153 |
T |
|
| Q |
225 |
gtcccttttggtcaaactaaggggttgagtttgca |
259 |
Q |
| |
|
||||| |||||||||||||| || || |||||||| |
|
|
| T |
9157152 |
gtccc-tttggtcaaactaaaggtttaagtttgca |
9157119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 9164443 - 9164487
Alignment:
| Q |
327 |
ataaaatttgtttgaaattttgaattgagaaaatatattgtaatc |
371 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
9164443 |
ataaattttgtgtgaaattttgacttgagaaaatatattgtaatc |
9164487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 431 - 467
Target Start/End: Complemental strand, 9181953 - 9181917
Alignment:
| Q |
431 |
attttacatttgaaaatatgatttctgcaattaaaat |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9181953 |
attttacatttgaaaatatgatttctgcaatcaaaat |
9181917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 674 - 766
Target Start/End: Original strand, 3355314 - 3355407
Alignment:
| Q |
674 |
ttccccaccatcatcttcaagtcacatgaattcataaaaaggactattttt-tgggaactaagccatataatatttgataagattcatcagttt |
766 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||||| ||||||| | | ||||||||||||||||||| |||||| ||| |||||| |
|
|
| T |
3355314 |
ttccccaccatcaactgcaagtcacatgaatttataaaaaggattatttttgtttgcactaagccatataatattttataagaatcaccagttt |
3355407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 431 - 528
Target Start/End: Original strand, 3355025 - 3355125
Alignment:
| Q |
431 |
attttacatttgaaaatatg-at--ttctgcaattaaaataaatagccagaactatctgttgatctatcaattatacaaacaattgcatcaattatcaat |
527 |
Q |
| |
|
||||||||||||||||||| || || |||||| ||||| ||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
3355025 |
attttacatttgaaaatatatatgattatgcaatcaaaatcaataggaagaacagcctgttgatctatctattgtacaaacaattgcatcaattatcaat |
3355124 |
T |
|
| Q |
528 |
g |
528 |
Q |
| |
|
| |
|
|
| T |
3355125 |
g |
3355125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 791 - 829
Target Start/End: Original strand, 3355637 - 3355675
Alignment:
| Q |
791 |
gcagggaacatagcaccaaaaatgtgaaaacgacgaaaa |
829 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
3355637 |
gcagggaacatagtaccaaaaatgtgaaaacgacaaaaa |
3355675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University