View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3686_low_30 (Length: 251)

Name: NF3686_low_30
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3686_low_30
NF3686_low_30
[»] chr7 (2 HSPs)
chr7 (1-244)||(41875668-41875911)
chr7 (4-55)||(5269468-5269519)
[»] chr2 (1 HSPs)
chr2 (4-48)||(3423849-3423893)
[»] chr1 (4 HSPs)
chr1 (6-58)||(36641810-36641862)
chr1 (66-120)||(24817795-24817849)
chr1 (160-217)||(24817944-24818001)
chr1 (4-44)||(45234146-45234186)
[»] chr8 (3 HSPs)
chr8 (146-217)||(40868457-40868528)
chr8 (7-48)||(31705029-31705070)
chr8 (6-55)||(41620374-41620423)
[»] chr4 (1 HSPs)
chr4 (8-48)||(1404367-1404407)
[»] chr3 (1 HSPs)
chr3 (4-60)||(32069084-32069139)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 41875911 - 41875668
Alignment:
Q  1 attaaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875911 attaaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaa 41875812  T
Q  101 attgtttatctaaataagtcttggatgatctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaat 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41875811 gttgtttatctaaataagtcttggatgatctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaat 41875712  T
Q  201 atagcaccggtttcttgtcgcaatatattcgcaacttcatctct 244  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  41875711 atagcaccggtttcttgtcgtaatatatacgcaacttcatctct 41875668  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 5269519 - 5269468
Alignment:
Q  4 aaataatttgaccttattttatcttttagtacagaaataacttatttataag 55  Q
    |||||||||||| ||||||||||||||| || |||||||| |||| ||||||    
T  5269519 aaataatttgactttattttatcttttattaaagaaataatttatatataag 5269468  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 3423849 - 3423893
Alignment:
Q  4 aaataatttgaccttattttatcttttagtacagaaataacttat 48  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||    
T  3423849 aaataatttgactttattttatcttttggtacaaaaataacttat 3423893  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 36641862 - 36641810
Alignment:
Q  6 ataatttgaccttattttatcttttagtacagaaataacttatttataagtaa 58  Q
    |||||||||| ||||||||||||||  || ||||||||||||| |||||||||    
T  36641862 ataatttgactttattttatcttttgttatagaaataacttatatataagtaa 36641810  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 24817795 - 24817849
Alignment:
Q  66 tataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtc 120  Q
    |||||||||||||| || ||| ||||| || |||| |||||||||||||||||||    
T  24817795 tataataagtgtttatgttacaaacactaagttaagttgtttatctaaataagtc 24817849  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 24817944 - 24818001
Alignment:
Q  160 tctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 217  Q
    ||||||||| ||||||||||||||| ||||||||| || | |||||||  ||||||||    
T  24817944 tctacctcattatgcggccatcatttgaagaaggtatatagatagcacttgtttcttg 24818001  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 45234186 - 45234146
Alignment:
Q  4 aaataatttgaccttattttatcttttagtacagaaataac 44  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  45234186 aaataatttgactttattttatcttttattatagaaataac 45234146  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 40868457 - 40868528
Alignment:
Q  146 tcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 217  Q
    ||||||||| ||| | |||||||||||||| ||||||||| ||| | || |||| |||||||| ||||||||    
T  40868457 tcaacattcaacagtgtacctcagtatgcgcccatcattataaggatgtataaaaatagcaccagtttcttg 40868528  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 31705070 - 31705029
Alignment:
Q  7 taatttgaccttattttatcttttagtacagaaataacttat 48  Q
    ||||||||| | |||||||||||||||||||||||| |||||    
T  31705070 taatttgacatgattttatcttttagtacagaaatagcttat 31705029  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 41620374 - 41620423
Alignment:
Q  6 ataatttgaccttattttatcttttagtacagaaataacttatttataag 55  Q
    |||||||||| ||||||||||||||  |||| ||||||||||| ||||||    
T  41620374 ataatttgactttattttatcttttgttacaaaaataacttatatataag 41620423  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 1404407 - 1404367
Alignment:
Q  8 aatttgaccttattttatcttttagtacagaaataacttat 48  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  1404407 aatttgaccttattttatcttttattatagaaatagcttat 1404367  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 32069139 - 32069084
Alignment:
Q  4 aaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagt 60  Q
    |||| ||||||| ||||||||||||||  || ||||||||||||||||||| |||||    
T  32069139 aaattatttgactttattttatcttttt-tatagaaataacttatttataattaagt 32069084  T

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