View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3686_low_32 (Length: 249)

Name: NF3686_low_32
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3686_low_32
NF3686_low_32
[»] chr7 (2 HSPs)
chr7 (1-238)||(3468393-3468630)
chr7 (1-53)||(12110324-12110376)
[»] chr4 (2 HSPs)
chr4 (5-52)||(30581735-30581782)
chr4 (1-52)||(7694064-7694115)
[»] chr1 (8 HSPs)
chr1 (1-53)||(10199462-10199514)
chr1 (5-52)||(6262704-6262751)
chr1 (1-52)||(16322814-16322865)
chr1 (1-52)||(48830130-48830181)
chr1 (7-52)||(28768061-28768106)
chr1 (4-52)||(15565889-15565937)
chr1 (13-49)||(45107590-45107626)
chr1 (12-52)||(48064274-48064314)
[»] chr2 (5 HSPs)
chr2 (1-52)||(35539688-35539739)
chr2 (1-52)||(34339871-34339922)
chr2 (2-49)||(37053562-37053609)
chr2 (1-47)||(33526021-33526067)
chr2 (12-52)||(31740024-31740064)
[»] chr5 (4 HSPs)
chr5 (3-52)||(39750108-39750157)
chr5 (1-51)||(26516366-26516416)
chr5 (12-52)||(2933716-2933756)
chr5 (12-52)||(35135727-35135767)
[»] chr8 (6 HSPs)
chr8 (1-49)||(28769393-28769441)
chr8 (1-52)||(12361157-12361208)
chr8 (1-52)||(34080320-34080371)
chr8 (1-50)||(6864513-6864562)
chr8 (19-52)||(10079135-10079168)
chr8 (1-41)||(10075605-10075645)
[»] chr6 (1 HSPs)
chr6 (1-52)||(10154186-10154237)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3468630 - 3468393
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatcttgaactgttgggagtgttaaaatgcaattctggtaaccatcgaaagcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3468630 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatcttgaactgttgggagtgttaaaatgcaattctggtaaccattgaaagcct 3468531  T
Q  101 aaaatatttctgaagtttaatgtcatacaacaatgtttcctcgatgtttttggttaagatgtatctaaataatattctatttcacataataatcccttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3468530 aaaatatttctgaagtttaatgtcatacaacaatgtttcctcgatgtttttggttaagatgtatctaaataatattctatttcacataataatcccttga 3468431  T
Q  201 tttagttaccatctatgtttttcctaatccctacctat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3468430 tttagttaccatctatgtttttcctaatccctacctat 3468393  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12110376 - 12110324
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatcttg 53  Q
    |||||||| |||||||| ||||||| |||| | |||||||| |||||||||||    
T  12110376 tatgaaaacagcttatagcttataccaaaacaatttgactttattttatcttg 12110324  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 30581735 - 30581782
Alignment:
Q  5 aaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  30581735 aaaacagcttatagcttatacgaaaatagtttgacttcattttatctt 30581782  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7694064 - 7694115
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||| |||||||| ||||||| |||| ||||||||||||||| |||||    
T  7694064 tatgaaaacagcttatagcttatacaaaaacagtttgacttcatttcatctt 7694115  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10199462 - 10199514
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatcttg 53  Q
    ||||||||||||||||   |||||||||||||||||||||| |||||||||||    
T  10199462 tatgaaaaaagcttatcgattatacgaaaatagtttgactttattttatcttg 10199514  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 6262751 - 6262704
Alignment:
Q  5 aaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    ||||||||||||| ||||||  ||||||||||||||| ||||||||||    
T  6262751 aaaaaagcttatagcttatataaaaatagtttgacttgattttatctt 6262704  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16322865 - 16322814
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||| |||||||||||| || |||||||||||||||  ||||||||||    
T  16322865 tatgaaaacagcttataacttctatgaaaatagtttgactatattttatctt 16322814  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48830130 - 48830181
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||| || ||||| |||||| |||||||||||||||| ||||||||||    
T  48830130 tatgaaaacagtttatagcttatatgaaaatagtttgactttattttatctt 48830181  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 28768106 - 28768061
Alignment:
Q  7 aaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||| || |||||||||||||||||||| || ||||||||||    
T  28768106 aaaagcttttagcttatacgaaaatagtttgattttattttatctt 28768061  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 15565889 - 15565937
Alignment:
Q  4 gaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    ||||| ||||||||  |||||| ||||||||||||||| ||||||||||    
T  15565889 gaaaacagcttatagtttatacaaaaatagtttgactttattttatctt 15565937  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 45107626 - 45107590
Alignment:
Q  13 ttataacttatacgaaaatagtttgacttcattttat 49  Q
    |||||||||||| |||||||||||||||| |||||||    
T  45107626 ttataacttatatgaaaatagtttgactttattttat 45107590  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 48064314 - 48064274
Alignment:
Q  12 cttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||||||||| |||||||||| |||| ||||||||||    
T  48064314 cttataacttatacaaaaatagttttactttattttatctt 48064274  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35539739 - 35539688
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||| ||||||||||||||| ||||||||||||| || ||||||||||    
T  35539739 tatgaaaatagcttataacttatatgaaaatagtttgattttattttatctt 35539688  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34339922 - 34339871
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||| || ||||| |||||||||||||| |||||||| ||||||||||    
T  34339922 tatgaaaatagtttataccttatacgaaaataatttgactttattttatctt 34339871  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 37053609 - 37053562
Alignment:
Q  2 atgaaaaaagcttataacttatacgaaaatagtttgacttcattttat 49  Q
    ||||||||| ||||||||||||| ||||| |||||||||| |||||||    
T  37053609 atgaaaaaaacttataacttatatgaaaacagtttgactttattttat 37053562  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33526021 - 33526067
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcatttt 47  Q
    |||||||||||||||| || |||| |||||||||||||||| |||||    
T  33526021 tatgaaaaaagcttattacatatatgaaaatagtttgactttatttt 33526067  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 31740024 - 31740064
Alignment:
Q  12 cttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||| |||||| |||||||||||||||| ||||||||||    
T  31740024 cttatagcttatatgaaaatagtttgactttattttatctt 31740064  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 39750157 - 39750108
Alignment:
Q  3 tgaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||| || |||||||||||| |||||||||||||||| ||||||||||    
T  39750157 tgaaaacaggttataacttatatgaaaatagtttgactttattttatctt 39750108  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26516416 - 26516366
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatct 51  Q
    |||||||| || |||||||||||| |||| ||||||||||| |||||||||    
T  26516416 tatgaaaacagtttataacttatatgaaagtagtttgactttattttatct 26516366  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 2933716 - 2933756
Alignment:
Q  12 cttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    ||||||||||||| ||||| ||||| |||||||||||||||    
T  2933716 cttataacttatatgaaaacagtttaacttcattttatctt 2933756  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 35135727 - 35135767
Alignment:
Q  12 cttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||| |||||| |||||||||||||||| ||||||||||    
T  35135727 cttatagcttatatgaaaatagtttgactttattttatctt 35135767  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28769393 - 28769441
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttat 49  Q
    |||||||| |||||||| |||||| |||||||||||||||| |||||||    
T  28769393 tatgaaaacagcttatagcttataagaaaatagtttgacttaattttat 28769441  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12361208 - 12361157
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||| |||||||| |||||| ||||| | |||||||||||||||||||    
T  12361208 tatgaaaacagcttatagcttatatgaaaacaatttgacttcattttatctt 12361157  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34080320 - 34080371
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||| |||||||| ||||||||  || |||||||||||||||||||||    
T  34080320 tatgaaaacagcttatagcttatacggtaacagtttgacttcattttatctt 34080371  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6864513 - 6864562
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatc 50  Q
    |||||||| | ||||||||||| | |||||||||||||||| ||||||||    
T  6864513 tatgaaaacaacttataacttacatgaaaatagtttgactttattttatc 6864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 10079135 - 10079168
Alignment:
Q  19 cttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||||||| |||||||||||||||||||||    
T  10079135 cttatacgaaaacagtttgacttcattttatctt 10079168  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10075605 - 10075645
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgactt 41  Q
    |||||||| |||||||||||||||  |||||||||||||||    
T  10075605 tatgaaaatagcttataacttatataaaaatagtttgactt 10075645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10154237 - 10154186
Alignment:
Q  1 tatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatctt 52  Q
    |||||||  ||||||||||||||| ||||| |||||||||| ||||||||||    
T  10154237 tatgaaagtagcttataacttatatgaaaacagtttgactttattttatctt 10154186  T

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