View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_low_35 (Length: 238)
Name: NF3686_low_35
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_35 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 48992811 - 48992590
Alignment:
| Q |
17 |
agtaaacatccaaaaaatgtacaaataagcacattaactggtatgaaccaccattccttaaaattctcaagagtaatgcttgaaccaagttcactaaata |
116 |
Q |
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| T |
48992811 |
agtaaacatccaaaaaatgtacaaagaagcacattaactggtatgaaccaccattccttaaaattctcaagagtaatgcttgaaccaagttcactaaata |
48992712 |
T |
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| Q |
117 |
ttaggcagggtaaaaataatgcaaatacaagtttacttaggagtttaaatgtggctttaggaattaatttcattcttgggtttgcaagaagtagtcctat |
216 |
Q |
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| T |
48992711 |
ttaggcagggtaaaaataatgcaaatacaagtttacttaggagtttaaatgtggctttaggaattaatttcattcttgggtttgcaagaaggagtcctat |
48992612 |
T |
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| Q |
217 |
gagtgtaaggcagattaacttc |
238 |
Q |
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| T |
48992611 |
gagtgtaaggcagattaacttc |
48992590 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 22624934 - 22625105
Alignment:
| Q |
47 |
acattaactggtatgaaccaccattccttaaaattctcaagagtaatgcttgaaccaagttcactaaatattaggcagggtaaaaataatgcaaatacaa |
146 |
Q |
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| T |
22624934 |
acattaaccggaataaaccaccaatccacaaaattctcaagtgtaatactttcgccaagttcggtaaaaataagacacggtaaaaacagagcaaaaacaa |
22625033 |
T |
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| Q |
147 |
gtttacttaggagtttaaatgtggctttaggaattaatttcattcttgggtttgcaagaagtagtcctatga |
218 |
Q |
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| T |
22625034 |
gtttactaaggagtttaaaggtagcttttgggatgaattgcattgtagggtttgcaagaagtaatccaatga |
22625105 |
T |
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