View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3686_low_36 (Length: 236)

Name: NF3686_low_36
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3686_low_36
NF3686_low_36
[»] chr7 (29 HSPs)
chr7 (1-223)||(3468624-3468846)
chr7 (56-140)||(31341200-31341284)
chr7 (1-71)||(38010724-38010794)
chr7 (47-140)||(23214911-23215004)
chr7 (21-133)||(24967091-24967203)
chr7 (27-123)||(39345507-39345603)
chr7 (1-140)||(39334203-39334342)
chr7 (21-72)||(45078308-45078359)
chr7 (30-140)||(46281063-46281171)
chr7 (38-74)||(9872919-9872955)
chr7 (1-61)||(24363601-24363661)
chr7 (41-73)||(28076604-28076636)
chr7 (1-52)||(34035927-34035978)
chr7 (29-140)||(39360061-39360172)
chr7 (18-140)||(22387817-22387939)
chr7 (28-74)||(29290370-29290416)
chr7 (86-140)||(29363603-29363657)
chr7 (18-96)||(48157085-48157163)
chr7 (1-74)||(3610727-3610800)
chr7 (5-74)||(9423581-9423650)
chr7 (1-74)||(40191306-40191379)
chr7 (30-107)||(46082075-46082152)
chr7 (1-57)||(2825235-2825291)
chr7 (1-101)||(4966166-4966266)
chr7 (11-107)||(20553123-20553219)
chr7 (48-104)||(29574582-29574638)
chr7 (5-73)||(39539769-39539837)
chr7 (27-71)||(39771797-39771841)
chr7 (1-57)||(44821969-44822025)
[»] chr3 (25 HSPs)
chr3 (1-130)||(37273144-37273273)
chr3 (29-107)||(14598507-14598585)
chr3 (27-135)||(36200132-36200240)
chr3 (1-107)||(43115066-43115172)
chr3 (1-73)||(1217788-1217860)
chr3 (1-72)||(41452533-41452604)
chr3 (1-107)||(30923853-30923958)
chr3 (27-72)||(29771874-29771919)
chr3 (79-140)||(45590739-45590800)
chr3 (30-74)||(41724251-41724295)
chr3 (1-116)||(1809987-1810102)
chr3 (1-140)||(11253511-11253650)
chr3 (1-72)||(31010412-31010483)
chr3 (1-96)||(40880913-40881008)
chr3 (4-62)||(33883749-33883807)
chr3 (27-117)||(37155037-37155127)
chr3 (27-117)||(37200392-37200482)
chr3 (1-74)||(36646369-36646442)
chr3 (3-72)||(43875477-43875546)
chr3 (30-70)||(13804816-13804856)
chr3 (1-61)||(22214659-22214719)
chr3 (32-96)||(34707461-34707525)
chr3 (27-71)||(42745074-42745118)
chr3 (47-107)||(49772622-49772682)
chr3 (19-63)||(52614195-52614239)
[»] chr6 (19 HSPs)
chr6 (47-132)||(32917253-32917338)
chr6 (2-101)||(281808-281907)
chr6 (1-102)||(31564652-31564755)
chr6 (18-101)||(2460111-2460194)
chr6 (18-73)||(9667973-9668028)
chr6 (27-98)||(31583715-31583786)
chr6 (1-139)||(2455820-2455958)
chr6 (2-120)||(34939755-34939873)
chr6 (30-75)||(4246449-4246494)
chr6 (80-140)||(13908329-13908389)
chr6 (48-123)||(33385586-33385661)
chr6 (1-71)||(20377910-20377980)
chr6 (5-74)||(733164-733233)
chr6 (27-60)||(2160938-2160971)
chr6 (27-59)||(5566179-5566211)
chr6 (30-74)||(9027617-9027661)
chr6 (47-107)||(27595521-27595581)
chr6 (18-62)||(27909637-27909681)
chr6 (48-140)||(29040083-29040175)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-140)||(159894-160033)
[»] chr1 (29 HSPs)
chr1 (2-119)||(32515383-32515500)
chr1 (51-140)||(23373234-23373323)
chr1 (27-140)||(33723303-33723416)
chr1 (1-73)||(52013908-52013980)
chr1 (1-140)||(12564420-12564559)
chr1 (27-94)||(15579518-15579585)
chr1 (29-72)||(30371186-30371229)
chr1 (30-140)||(4868439-4868548)
chr1 (1-59)||(6279409-6279467)
chr1 (30-140)||(6292532-6292641)
chr1 (1-135)||(10199334-10199468)
chr1 (19-140)||(6231737-6231858)
chr1 (1-62)||(35017586-35017647)
chr1 (27-107)||(12477242-12477321)
chr1 (27-107)||(17420239-17420319)
chr1 (10-54)||(52865941-52865985)
chr1 (5-71)||(3224437-3224503)
chr1 (79-141)||(5157160-5157222)
chr1 (29-119)||(29007658-29007748)
chr1 (27-140)||(3597202-3597315)
chr1 (1-102)||(7262477-7262578)
chr1 (1-62)||(25479591-25479652)
chr1 (18-71)||(33108612-33108665)
chr1 (1-62)||(47020517-47020578)
chr1 (27-71)||(3244935-3244979)
chr1 (27-75)||(4549266-4549314)
chr1 (18-70)||(6262047-6262099)
chr1 (5-73)||(27140492-27140560)
chr1 (90-146)||(29793613-29793669)
[»] chr5 (14 HSPs)
chr5 (1-73)||(41957439-41957511)
chr5 (4-140)||(36542207-36542339)
chr5 (2-92)||(4619718-4619808)
chr5 (40-134)||(11457147-11457241)
chr5 (47-123)||(38047817-38047893)
chr5 (41-107)||(11700332-11700398)
chr5 (86-140)||(34975459-34975512)
chr5 (18-107)||(6109510-6109599)
chr5 (1-74)||(7674658-7674731)
chr5 (98-143)||(27565126-27565171)
chr5 (1-58)||(32059362-32059419)
chr5 (27-67)||(29590623-29590663)
chr5 (1-129)||(32172663-32172791)
chr5 (30-74)||(38766532-38766576)
[»] chr2 (23 HSPs)
chr2 (1-72)||(34652025-34652096)
chr2 (1-71)||(9556249-9556319)
chr2 (1-71)||(22681175-22681245)
chr2 (1-70)||(1939323-1939392)
chr2 (27-135)||(9478335-9478443)
chr2 (16-67)||(10285885-10285936)
chr2 (41-140)||(15120233-15120332)
chr2 (1-135)||(30552569-30552704)
chr2 (4-70)||(32694225-32694291)
chr2 (1-135)||(32821819-32821953)
chr2 (29-74)||(9878669-9878714)
chr2 (27-140)||(43456628-43456741)
chr2 (27-107)||(41041976-41042056)
chr2 (30-72)||(30538162-30538204)
chr2 (18-75)||(7283023-7283080)
chr2 (10-107)||(41809199-41809296)
chr2 (4-96)||(10567070-10567162)
chr2 (23-71)||(14451040-14451088)
chr2 (38-74)||(29936040-29936076)
chr2 (27-59)||(32615957-32615989)
chr2 (18-74)||(35329805-35329861)
chr2 (18-62)||(40943935-40943979)
chr2 (1-73)||(43141881-43141953)
[»] scaffold0012 (1 HSPs)
scaffold0012 (29-107)||(38630-38708)
[»] chr4 (21 HSPs)
chr4 (1-130)||(2996583-2996712)
chr4 (1-118)||(11264311-11264428)
chr4 (18-101)||(27123312-27123395)
chr4 (19-94)||(43932463-43932538)
chr4 (10-96)||(6987706-6987792)
chr4 (1-106)||(1137722-1137827)
chr4 (26-70)||(20656072-20656116)
chr4 (17-61)||(23990683-23990727)
chr4 (1-72)||(29263380-29263451)
chr4 (5-71)||(1965955-1966021)
chr4 (27-141)||(19304962-19305076)
chr4 (22-140)||(29375934-29376052)
chr4 (1-51)||(29563414-29563464)
chr4 (32-102)||(41097215-41097285)
chr4 (17-62)||(23983987-23984032)
chr4 (5-74)||(28614795-28614864)
chr4 (27-136)||(45927385-45927494)
chr4 (44-140)||(6428071-6428167)
chr4 (79-135)||(18628479-18628535)
chr4 (10-62)||(29467623-29467675)
chr4 (87-135)||(54277249-54277297)
[»] scaffold0311 (1 HSPs)
scaffold0311 (27-71)||(10607-10651)
[»] chr8 (26 HSPs)
chr8 (11-135)||(6950342-6950466)
chr8 (1-65)||(30389109-30389173)
chr8 (28-74)||(8255429-8255475)
chr8 (1-107)||(14949876-14949982)
chr8 (47-140)||(4763950-4764043)
chr8 (1-74)||(9540983-9541056)
chr8 (1-141)||(39551129-39551269)
chr8 (17-140)||(9700027-9700150)
chr8 (1-120)||(11415164-11415283)
chr8 (27-74)||(25869253-25869300)
chr8 (1-60)||(30277246-30277305)
chr8 (12-74)||(1112256-1112318)
chr8 (29-95)||(7918412-7918478)
chr8 (1-107)||(11569411-11569517)
chr8 (1-130)||(4055547-4055676)
chr8 (79-140)||(7918703-7918763)
chr8 (30-62)||(3600737-3600769)
chr8 (27-75)||(11185257-11185305)
chr8 (27-107)||(13000378-13000458)
chr8 (30-62)||(14339604-14339636)
chr8 (1-37)||(18931322-18931358)
chr8 (27-107)||(30191095-30191175)
chr8 (11-71)||(41606893-41606953)
chr8 (41-129)||(41620223-41620311)
chr8 (86-138)||(43208079-43208131)
chr8 (12-120)||(44401582-44401689)
[»] scaffold0147 (1 HSPs)
scaffold0147 (10-74)||(12691-12755)
[»] scaffold0110 (1 HSPs)
scaffold0110 (42-136)||(33838-33931)
[»] scaffold0286 (1 HSPs)
scaffold0286 (27-60)||(16146-16179)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-74)||(306336-306409)
[»] scaffold0024 (1 HSPs)
scaffold0024 (25-101)||(27610-27686)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3468624 - 3468846
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3468624 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 3468723  T
Q  101 tgtttattttagtagataagttcgaataagtcaattcaaatgggccaatttacctgagggtcatcaaaccccaaaaaatgggataaagaatcttgacagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3468724 tgtttattttagtagataagttcgaataagtcaattcaaatgggccaatttacctgagggtcatcaaaccccaaaaaatgggataaagaatcttgacagc 3468823  T
Q  201 caaggaattgctggatatgactg 223  Q
    |||||||||||||||||||||||    
T  3468824 caaggaattgctggatatgactg 3468846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 31341200 - 31341284
Alignment:
Q  56 atgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    |||||||||||||||||||  |||||||| ||||||||| ||||||||||||   |||||| ||| || ||||||||||| ||||    
T  31341200 atgtcattagttgtttccataaactctcccaaacagtcttaaaagtgtttatgcaagtagaaaagctcaaataagtcaatccaaa 31341284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 38010724 - 38010794
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    ||||||||||||||||||||||||| |||||||||| |  ||||| |||||| |||||| ||| |||||||    
T  38010724 tttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgttgttt 38010794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 23214911 - 23215004
Alignment:
Q  47 cttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    |||||||| ||||||| |||||||| ||  || ||||  ||||||||||| ||||||||||  ||||||||||| || ||||||||||| ||||    
T  23214911 cttatggaaatgtcataagttgttttcataaattctctcaaacagtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaa 23215004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 24967091 - 24967203
Alignment:
Q  21 aacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataag 120  Q
    |||||||| ||||||| || ||||||||| |||| |||| || |||||||||||  | |||| | ||||||||||| || |||||||  |||||||||||    
T  24967091 aacttgtgaaaataagctgaaaacaacttctggatatgttataagttgtttccataatctcttccaaacagtctcataaatgtttatactagtagataag 24967190  T
Q  121 ttcgaataagtca 133  Q
     || || ||||||    
T  24967191 ctcaaaaaagtca 24967203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 39345507 - 39345603
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttc 123  Q
    |||||||||| || || ||||||||||||||||||| |  ||||||||  |||||| | ||||||||||| ||||  |||||  |||||||||||||    
T  39345507 tggaaataagctgaaagcaacttatggacatgtcataaactgtttccatgaactctaccaaacagtctcacaagtaattattccagtagataagttc 39345603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 39334203 - 39334342
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    ||||| || ||||||| | || ||| |||||||||| || |  ||||||||||||||||||| | |||||||||  |||||| | |||||||||||  ||    
T  39334203 tttcaaaagctatcctggcgagcttatggaaataagctgaatgcaacttatggacatgtcataaattgtttccataaactctaccaaacagtctcacgag 39334302  T
Q  101 tgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    |  |||||  ||||||||||||| || ||| || ||||||    
T  39334303 taattattccagtagataagttcaaacaagccagttcaaa 39334342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 45078308 - 45078359
Alignment:
Q  21 aacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttc 72  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||| ||||    
T  45078308 aacttgtggaaataagttgaaaacagcttatggacatgtcataagttatttc 45078359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 46281171 - 46281063
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataa 129  Q
    ||||||| || |||||| |||| |||||| ||| ||||||||||   ||||||   |||||  ||||||||||||||| ||||||||||||||| |||||    
T  46281171 aaataagctgaaaacaatttatagacatggcataagttgtttccgtaaactctttcaaaca--ctcaaaagtgtttatgttagtagataagttcaaataa 46281074  T
Q  130 gtcaattcaaa 140  Q
    | |||| ||||    
T  46281073 gccaatccaaa 46281063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 9872919 - 9872955
Alignment:
Q  38 tggaaacaacttatggacatgtcattagttgtttcca 74  Q
    ||||||||||||||||||||||||| |||||||||||    
T  9872919 tggaaacaacttatggacatgtcataagttgtttcca 9872955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24363661 - 24363601
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtca 61  Q
    |||||||| ||||||| ||||  || |||||||||| || |||||||||||||||||||||    
T  24363661 tttcataagctatcctggagaggttatggaaataagctgaaaacaacttatggacatgtca 24363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 28076604 - 28076636
Alignment:
Q  41 aaacaacttatggacatgtcattagttgtttcc 73  Q
    |||||||||||||||||||||||||||||||||    
T  28076604 aaacaacttatggacatgtcattagttgtttcc 28076636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34035927 - 34035978
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg 52  Q
    |||||||| ||||| ||||||||||| | |||||||||| ||||||||||||    
T  34035927 tttcataagctatcttagagaacttgcgaaaataagttgaaaacaacttatg 34035978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 39360061 - 39360172
Alignment:
Q  29 gaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaata 128  Q
    |||||||| || || ||||||||||| ||||||| |||||||||||  ||||||   |||||||||||  |||  |||||  ||||||||||||| || |    
T  39360061 gaaataagctgaaagcaacttatggatatgtcataagttgtttccataaactctatcaaacagtctcacgagtaattattccagtagataagttcaaaca 39360160  T
Q  129 agtcaattcaaa 140  Q
    || || ||||||    
T  39360161 agccagttcaaa 39360172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 22387939 - 22387817
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagat 117  Q
    |||| ||| ||||||||||||  |||||  ||||  ||||| ||| |||||||| ||  | |||||| ||||||||||| | |||||||| | |||| ||    
T  22387939 gagagcttatggaaataagttaaaaacagtttataaacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaat 22387840  T
Q  118 aagttcgaataagtcaattcaaa 140  Q
    |||||| | ||||||||| ||||    
T  22387839 aagttctagtaagtcaatccaaa 22387817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 29290370 - 29290416
Alignment:
Q  28 ggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    ||||||| |||| ||||| |||||||||||||||| |||||||||||    
T  29290370 ggaaatatgttgaaaacagcttatggacatgtcataagttgtttcca 29290416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 29363603 - 29363657
Alignment:
Q  86 aaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    ||||||||||| ||||| |||| ||||||||||||||| |||||| |||| ||||    
T  29363603 aaacagtctcacaagtgcttatgttagtagataagttcaaataagccaatccaaa 29363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 48157163 - 48157085
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctca 96  Q
    |||| ||| |||||||||| || ||||| |||||||||||| ||| ||||||||| |  | |||||| |||||||||||    
T  48157163 gagatcttatggaaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctca 48157085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3610800 - 3610727
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||| ||| |||||||||||| ||| | |||||||| || |||   ||||||||||||||||||| ||||||||    
T  3610800 tttcgtaaactatcctagagagcttatagaaataagctgaaaaaggcttatggacatgtcattagctgtttcca 3610727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 9423650 - 9423581
Alignment:
Q  5 ataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||| ||||||| |||| ||| | |||||||| || |||||||||||| ||||||||| | |||||||||    
T  9423650 ataagctatcctggagagcttcttgaaataagctgaaaacaacttatgaacatgtcataaattgtttcca 9423581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40191379 - 40191306
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||||||||||||| | |||||||| |||||||||  | ||| ||||||||| |||||| || || ||||||||    
T  40191379 tttcataatctatcatggagaacttatggaaataatcttgaagcaacttatgaacatgttataagctgtttcca 40191306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 46082075 - 46082152
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    ||||||| || ||||||||||||| |||||||| |||||||| ||  | |||||   ||||||||||||| |||||||    
T  46082075 aaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctcattaacagtctcaaaattgtttat 46082152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2825291 - 2825235
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacat 57  Q
    ||||| || |||||||||||||||| |||||||||| || ||| |||||||| ||||    
T  2825291 tttcacaagctatcctagagaacttatggaaataagctgaaaataacttatgaacat 2825235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4966166 - 4966266
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| | |||||  ||| ||| |||||||||  || ||||||||||||||||| |||| ||| ||||| |  | |||||| ||||||||||| |||    
T  4966166 tttcataagccatcctgaagagcttatggaaataaactgaaaacaacttatggacatatcataagtggtttctataagctctcctaaacagtctcacaag 4966265  T
Q  101 t 101  Q
    |    
T  4966266 t 4966266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 20553123 - 20553219
Alignment:
Q  11 tatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    |||||||| || ||| |||||||||  || |||||||||||| ||||||| | || ||||||||  | ||||||  |||||||||| ||||| ||||    
T  20553123 tatcctagtgagcttatggaaataatctgaaaacaacttatgaacatgtcgtaagctgtttccataagctctcctgaacagtctcacaagtgcttat 20553219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 29574638 - 29574582
Alignment:
Q  48 ttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtt 104  Q
    ||||||||||||||| || ||||||||  |  ||||||||||||||||| |||||||    
T  29574638 ttatggacatgtcataagctgtttccataagttctccgaaacagtctcacaagtgtt 29574582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 39539837 - 39539769
Alignment:
Q  5 ataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcc 73  Q
    |||| ||||||| | || |||||  ||||||| || ||||| |||||||||||||||| ||||||||||    
T  39539837 ataagctatcctcgggagcttgtcaaaataagctgaaaacagcttatggacatgtcataagttgtttcc 39539769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 39771797 - 39771841
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    ||||||||||||| ||||| ||||||||||| |||| ||||||||    
T  39771797 tggaaataagttgaaaacagcttatggacatatcataagttgttt 39771841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44821969 - 44822025
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacat 57  Q
    |||||||| |||| || |||||||| || |||||||||| ||||||||||| |||||    
T  44821969 tttcataagctattctggagaacttatgaaaataagttgaaaacaacttattgacat 44822025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 37273144 - 37273273
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||| | |||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||  | |||||| |||||||||||  ||    
T  37273144 tttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccag 37273243  T
Q  101 tgtttattttagtagataagttcgaataag 130  Q
    || ||||  || || |||||||| ||||||    
T  37273244 tgcttatgctaataaataagttcaaataag 37273273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 14598585 - 14598507
Alignment:
Q  29 gaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||  ||||| || |||||| | |||| ||||||||    
T  14598585 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacagacccaaatgtgtttat 14598507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 36200132 - 36200240
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaa 126  Q
    |||||||||| || |||||||||||||||||||||| |||||||| ||| |||||||   |||| ||||| ||||| |  ||| | |||||||| || ||    
T  36200132 tggaaataagctgaaaacaacttatggacatgtcataagttgtttacaaaaactctctccaacattctcacaagtgctgttttcattagataagctcaaa 36200231  T
Q  127 taagtcaat 135  Q
    |||||||||    
T  36200232 taagtcaat 36200240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 43115066 - 43115172
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||| | ||||| | |||| ||| |||||||||| || |||||| ||||||||||||||| |||||||||||  |||||| | ||||| ||||| |||    
T  43115066 tttcatgaactatcattgagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaag 43115165  T
Q  101 tgtttat 107  Q
    || ||||    
T  43115166 tgattat 43115172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1217860 - 1217788
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcc 73  Q
    |||||||| ||||||| |||||||| || || |||| || |||||||||||||||||||||| || |||||||    
T  1217860 tttcataagctatccttgagaacttatgaaagtaagatgaaaacaacttatggacatgtcataagctgtttcc 1217788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 41452533 - 41452604
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttc 72  Q
    |||||||| ||||||| ||||| ||||||||||||| || ||||| ||||| ||||| |||| |||||||||    
T  41452533 tttcataagctatcctggagaagttgtggaaataaggtgaaaacagcttatagacatatcataagttgtttc 41452604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 30923958 - 30923853
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||||||||||  || | |||||||| || ||||| ||||| |||||||||| || ||||||| | | |||||  ||||||||||| |||    
T  30923958 tttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttcc-atagctctcataaacagtctcacaag 30923860  T
Q  101 tgtttat 107  Q
    |||||||    
T  30923859 tgtttat 30923853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 29771874 - 29771919
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttc 72  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||    
T  29771874 tggaaataagttgaaaacaacttatggacatgtcctaagttgtttc 29771919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 45590739 - 45590800
Alignment:
Q  79 ctctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    |||||| ||||||||||| ||||| ||||  |||||||||||||| || |||||||||||||    
T  45590739 ctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaa 45590800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 41724251 - 41724295
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    ||||||| || |||||||||||||||||||||| |||||||||||    
T  41724251 aaataagctgaaaacaacttatggacatgtcataagttgtttcca 41724295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1809987 - 1810102
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||||||   ||||| | ||||||||  | |||||||| ||||||||||||| ||||||||||   | |||||  ||| ||||||| |||    
T  1809987 tttcataagctatcctacgaaacttatagaaataagcagaaaacaactcatggacatgtcataagttgtttccgtaagctctctcaaatagtctcacaag 1810086  T
Q  101 tgtttattttagtaga 116  Q
    || |||| ||||||||    
T  1810087 tgattatgttagtaga 1810102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 11253511 - 11253650
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| |||||||||||| |||  ||||||| | || |||||  |||| || ||||||| ||||||||  |  || ||| | ||||||||||  |||    
T  11253511 tttcataagctatcctagagagcttagggaaataggctgaaaacagtttatagatatgtcataagttgtttttataaattctgccaaacagtctctcaag 11253610  T
Q  101 tgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    || ||||  ||||||||||  || ||||||||||||||||    
T  11253611 tgcttatgctagtagataatctcaaataagtcaattcaaa 11253650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31010412 - 31010483
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttc 72  Q
    |||| ||| ||||| |||||| ||| ||||| |||| || ||||| |||||||||||||||| |||||||||    
T  31010412 tttcgtaacctatcatagagagcttatggaattaagctgaaaacagcttatggacatgtcataagttgtttc 31010483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 40881008 - 40880913
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctca 96  Q
    |||||||| ||||||||||||| || |  |||||||||  |||||||||| || |||||||| |||||||| ||  | |||||  |||||||||||    
T  40881008 tttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctcaaacagtctca 40880913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 33883807 - 33883749
Alignment:
Q  4 cataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcat 62  Q
    ||||| ||||| |||||||||| || ||||||| || |||||||||||| |||||||||    
T  33883807 cataagctatcttagagaacttatgaaaataagctgaaaacaacttatgaacatgtcat 33883749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 37155037 - 37155127
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagat 117  Q
    ||||||||||| | ||||||||||||||||||| || |||| ||||||  ||||||    |||||||||| || ||||||| | |||||||    
T  37155037 tggaaataagtagaaaacaacttatggacatgtaataagttatttccataaactctttcgaacagtctcacaaatgtttatgtaagtagat 37155127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 37200392 - 37200482
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagat 117  Q
    ||||||||||| | ||||||||||||||||||| || |||| ||||||  ||||||    |||||||||| || ||||||| | |||||||    
T  37200392 tggaaataagtagaaaacaacttatggacatgtaataagttatttccataaactctttcgaacagtctcacaaatgtttatgtaagtagat 37200482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 36646442 - 36646369
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||||||| ||||||||||||  || | |||||||| || ||||| |||||||||||| ||| ||| |||||||    
T  36646442 tttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttcca 36646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 43875477 - 43875546
Alignment:
Q  3 tcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttc 72  Q
    |||||| ||||||| |||||||| |||||||||   | ||||||||||||||| | |||| |||||||||    
T  43875477 tcataagctatcctggagaacttatggaaataatcagaaaacaacttatggacgtatcataagttgtttc 43875546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 13804816 - 13804856
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtt 70  Q
    |||||||||| ||||| |||||||||||||||| |||||||    
T  13804816 aaataagttgaaaacagcttatggacatgtcataagttgtt 13804856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22214719 - 22214659
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtca 61  Q
    |||||||| ||||||||||||  ||  ||||||||| || ||||| |||||||||||||||    
T  22214719 tttcataagctatcctagagacattacggaaataagctgaaaacagcttatggacatgtca 22214659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 34707525 - 34707461
Alignment:
Q  32 ataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctca 96  Q
    |||||||| |||||||||||||||||||||  |||||||| ||| |  ||||  |||||||||||    
T  34707525 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 34707461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 42745074 - 42745118
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    |||||||||| || |||||||||||| ||||||||| ||||||||    
T  42745074 tggaaataagatgaaaacaacttatgaacatgtcataagttgttt 42745118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 49772682 - 49772622
Alignment:
Q  47 cttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    ||||||||||| |||| |||||||||||  | |||||| |||||||||||  |||||||||    
T  49772682 cttatggacatctcataagttgtttccataagctctcctaaacagtctcactagtgtttat 49772622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 52614195 - 52614239
Alignment:
Q  19 agaacttgtggaaataagttggaaacaacttatggacatgtcatt 63  Q
    |||||||||||||||||| || |||||||||| | ||||||||||    
T  52614195 agaacttgtggaaataagctgaaaacaacttacgtacatgtcatt 52614239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 32917253 - 32917338
Alignment:
Q  47 cttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtc 132  Q
    |||||||||||||||| |||||||||||  | |||||| ||||||||||| ||||||||||| |||||| |||| || ||||||||    
T  32917253 cttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttattctagtaggtaagctctaataagtc 32917338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 281907 - 281808
Alignment:
Q  2 ttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagt 101  Q
    ||||||| |||||||||||| ||  |||||||||| || ||||||||||| |||||||||| ||||| |||||  | |||||| ||||||||||| ||||    
T  281907 ttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31564755 - 31564652
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaacagtctcaaa 98  Q
    |||||||| || | ||||| ||| | |||||||||| || ||||||||| ||  ||||||||||||||||||||||  |||||| ||||||||||||| |    
T  31564755 tttcataagcttttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcaca 31564656  T
Q  99 agtg 102  Q
    ||||    
T  31564655 agtg 31564652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 2460194 - 2460111
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagt 101  Q
    |||| ||| ||||||||||||| ||||||||||  |||||||||| |||||||||||  | |||||  ||||||||||| ||||    
T  2460194 gagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagt 2460111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 9668028 - 9667973
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcc 73  Q
    |||| ||| ||||||||||||| ||||| |||||||||||||||| ||||||||||    
T  9668028 gagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttcc 9667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 31583715 - 31583786
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaa 98  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||  |  | |||||| |||||||||||||    
T  31583715 tggaaataagttgaaaacaacttatggacatgtcattagcggtttaaataagctctccaaaacagtctcaaa 31583786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 2455820 - 2455958
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||| | |||| ||| ||||||||||||| ||| |  |||||| |||||||| |||||||||||  | |||| | ||||| ||||  |||    
T  2455820 tttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaatctcgcaag 2455919  T
Q  101 tgtttattttagtagataagttcgaataagtcaattcaa 139  Q
    || ||||    ||||||||| || |||||||||||||||    
T  2455920 tgcttatgccggtagataagctcaaataagtcaattcaa 2455958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 34939755 - 34939873
Alignment:
Q  2 ttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagt 101  Q
    ||||||| ||||||| ||||  || |||||||||| || |||||| ||||||||||||||| || |||||||   | |||||| ||||||| ||| || |    
T  34939755 ttcataagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctccaaaacagtttcacaaat 34939854  T
Q  102 gtttattttagtagataag 120  Q
    |||||| | | ||||||||    
T  34939855 gtttatgtcactagataag 34939873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 4246449 - 4246494
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtttccaa 75  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||    
T  4246449 aaataagttgaaaacagcttatggacatgtcatgagttgtttccaa 4246494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 13908329 - 13908389
Alignment:
Q  80 tctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    ||||| ||| ||| ||| |||||||||| | ||||||||||||| ||||||||||||||||    
T  13908329 tctcctaaagagtgtcacaagtgtttatgtcagtagataagttcaaataagtcaattcaaa 13908389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 33385586 - 33385661
Alignment:
Q  48 ttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttc 123  Q
    ||||||||||||||| || ||||||||  |||||| | ||||||| ||| ||||| |||| | |||||||||||||    
T  33385586 ttatggacatgtcatgagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttc 33385661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 20377980 - 20377910
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    |||||||||| |||||| ||| |||  |||||||||  | ||||||||||| |||||||||| ||||||||    
T  20377980 tttcataatccatcctatagagctttgggaaataagccgaaaacaacttatagacatgtcataagttgttt 20377910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 733233 - 733164
Alignment:
Q  5 ataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||| |||||||||| ||||| | |||||| | || ||||||||| |||||||||||| |||| ||||||    
T  733233 ataagctatcctagaaaacttatagaaatatgctgaaaacaacttgtggacatgtcataagttatttcca 733164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 2160971 - 2160938
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtc 60  Q
    ||||||||||||| ||||||||||||||||||||    
T  2160971 tggaaataagttgaaaacaacttatggacatgtc 2160938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 5566211 - 5566179
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgt 59  Q
    ||||||||||||| |||||||||||||||||||    
T  5566211 tggaaataagttgaaaacaacttatggacatgt 5566179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 9027617 - 9027661
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    ||||||| || |||||||||||||||||||||| |||| ||||||    
T  9027617 aaataagctgaaaacaacttatggacatgtcataagttatttcca 9027661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 27595581 - 27595521
Alignment:
Q  47 cttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    |||||| ||||||||| |||||||||||  || ||||| ||||||||||| ||||| ||||    
T  27595581 cttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgcttat 27595521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 27909681 - 27909637
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcat 62  Q
    |||| ||| |||||||||| || ||||||||||||||||||||||    
T  27909681 gagagcttatggaaataagctgaaaacaacttatggacatgtcat 27909637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 29040175 - 29040083
Alignment:
Q  48 ttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    ||||||||||||||| || || ||| || |||| ||| ||||||||||| ||||| |||| |||||| ||||   | |||||| |||||||||    
T  29040175 ttatggacatgtcataagctgattcaaataactatcccaaacagtctcacaagtgcttatgttagtatataaaaccaaataagccaattcaaa 29040083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 160033 - 159894
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| |||||||| ||| |||||||||||||| || ||||  ||||| |||||||||| |  ||||||||  |  ||||| ||| ||| ||| |||    
T  160033 tttcataagctatcctaaagagcttgtggaaataagctgaaaactgcttatagacatgtcataaactgtttccattagttctccaaaatagtttcacaag 159934  T
Q  101 tgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    ||||||| |||||||||||| || |||||| |||| ||||    
T  159933 tgtttatattagtagataagctcaaataagccaatccaaa 159894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 32515500 - 32515383
Alignment:
Q  2 ttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagt 101  Q
    ||||||| ||||| | |||| ||| | || |||||||| ||||||||||| ||||||||||  | ||||||||  | |||||| ||||||||||| ||||    
T  32515500 ttcataagctatcatggagagcttatagatataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagt 32515401  T
Q  102 gtttattttagtagataa 119  Q
    | |||| |||||||||||    
T  32515400 gcttatgttagtagataa 32515383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 23373323 - 23373234
Alignment:
Q  51 tggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    |||||||||||| ||||||||| |  | |||||| ||||| ||||| ||||| |||| | |||||| |||||| ||||||||||||||||    
T  23373323 tggacatgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaattcaaa 23373234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 33723416 - 33723303
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaa 126  Q
    |||||||||| || ||||| || ||| ||||||||| || ||||||||  |  | ||| || |||||||| ||||||||||  |||||||||||||| ||    
T  33723416 tggaaataagctgaaaacatctcatgaacatgtcatgagctgtttccataagttttcccaagcagtctcacaagtgtttatggtagtagataagttcaaa 33723317  T
Q  127 taagtcaattcaaa 140  Q
    ||||||||| ||||    
T  33723316 taagtcaatccaaa 33723303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 52013908 - 52013980
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcc 73  Q
    |||| ||| |||||||||||  ||| ||||||||||||  ||||||||| ||||| |||||||||||||||||    
T  52013908 tttcgtaagctatcctagagtgcttatggaaataagttaaaaacaacttctggacctgtcattagttgtttcc 52013980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 12564559 - 12564420
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||| | |||||||| |||||||||| || ||||||||||| ||| |||||| || | | | |   | |||||| |||||||| || |||    
T  12564559 tttcataagctatcttggagaacttatggaaataagctgaaaacaacttattgacttgtcataagctatatacgtaagctctcccaaacagtcacacaag 12564460  T
Q  101 tgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    || |||| | |||| ||||| || ||||||||||||||||    
T  12564459 tgcttatatcagtatataagctcaaataagtcaattcaaa 12564420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 15579518 - 15579585
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtct 94  Q
    |||||||||| ||  ||||||||||||||||||||| |||||||||||  | |||||| |||||||||    
T  15579518 tggaaataagctgagaacaacttatggacatgtcataagttgtttccacaagctctcccaaacagtct 15579585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 30371186 - 30371229
Alignment:
Q  29 gaaataagttggaaacaacttatggacatgtcattagttgtttc 72  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  30371186 gaaataagctgaaaacaacttatggacatgtcattagttgtttc 30371229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 4868439 - 4868548
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataa 129  Q
    |||||||||| ||||||||||| |||||||||| |||||||| ||  |||||||  ||||||||||| |||||  ||| | | ||||||| ||| |||||    
T  4868439 aaataagttgaaaacaacttattgacatgtcataagttgttt-cataaactctctcaaacagtctcacaagtgcctatgtcaatagataaattcaaataa 4868537  T
Q  130 gtcaattcaaa 140  Q
     ||||| ||||    
T  4868538 atcaatccaaa 4868548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6279409 - 6279467
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgt 59  Q
    |||||||| |||||||||||| ||| |||||||| | || |||||||||||||||||||    
T  6279409 tttcataagctatcctagagagcttatggaaatacgctgaaaacaacttatggacatgt 6279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 6292532 - 6292641
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataa 129  Q
    ||||||| || ||||| |||||| ||||||||| || |||||  || || ||||| ||||| ||||||||||| |||| | |||||||||| || |||||    
T  6292532 aaataagctgaaaacagcttatgaacatgtcataagctgttttaaa-aattctcccaaacaatctcaaaagtgcttatgtcagtagataagctcaaataa 6292630  T
Q  130 gtcaattcaaa 140  Q
    |||||| ||||    
T  6292631 gtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 10199468 - 10199334
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||  |||||| ||| || ||||||| || |||||||||||| ||||||||| || | ||| ||  |  ||||| ||| ||| ||| |||    
T  10199468 tttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaag 10199369  T
Q  101 tgtttattttagtagataagttcgaataagtcaat 135  Q
    || |||| |||||||||||| || |||||||||||    
T  10199368 tgcttatgttagtagataagctcaaataagtcaat 10199334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 6231858 - 6231737
Alignment:
Q  19 agaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagata 118  Q
    ||||||| | |||||||| || |||||  |||||||||||||||||||||||||||  | || |||  |||| ||||| || |||||||  |||||||||    
T  6231858 agaacttatagaaataagctgaaaacagtttatggacatgtcattagttgtttccatgagctatccagaacaatctcacaaatgtttatgctagtagata 6231759  T
Q  119 agttcgaataagtcaattcaaa 140  Q
    |  || |||||  |||||||||    
T  6231758 acctcaaataaaccaattcaaa 6231737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35017586 - 35017647
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcat 62  Q
    |||||||| || |||| |||| ||| ||||||||||||| ||| ||||||||||||||||||    
T  35017586 tttcataagctgtcctggagagcttatggaaataagttgaaaataacttatggacatgtcat 35017647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 12477321 - 12477242
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    |||||||||| || |||||||||||||||||||||| || || || ||  |||||||| ||| ||||||| ||||||||||    
T  12477321 tggaaataagctgaaaacaacttatggacatgtcataagctgctttcattaactctcc-aaatagtctcagaagtgtttat 12477242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 17420239 - 17420319
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    ||||||||||||| |||||| |||||||||||| || |||||||| ||  | |||| | ||||||||| | ||||||||||    
T  17420239 tggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaagtgtttat 17420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 52865985 - 52865941
Alignment:
Q  10 ctatcctagagaacttgtggaaataagttggaaacaacttatgga 54  Q
    ||||||||||||| |||||||||||||||| |||||| |||||||    
T  52865985 ctatcctagagaagttgtggaaataagttgaaaacaaattatgga 52865941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 3224437 - 3224503
Alignment:
Q  5 ataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    |||| |||| ||||||||||| || ||||||| ||  ||||||||||||||||||||| ||| ||||    
T  3224437 ataagctattctagagaacttatgaaaataagctgagaacaacttatggacatgtcataagtagttt 3224503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 5157160 - 5157222
Alignment:
Q  79 ctctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaat 141  Q
    |||||| ||||||| ||| |||||||||| |  |||||||||||| ||||||||||| |||||    
T  5157160 ctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaat 5157222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 29007748 - 29007658
Alignment:
Q  29 gaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataa 119  Q
    |||||||| || |||||||||||| |||| |||| | |||||||||| | || ||| ||||||||||| | || ||||| || ||||||||    
T  29007748 gaaataagctgaaaacaacttatgaacatatcataaattgtttccaaaagctatccaaaacagtctcacatgtatttatgttggtagataa 29007658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 3597315 - 3597202
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaa 126  Q
    |||||||||| || ||| | ||||||| |||||||| |||| |||  | ||||||| | ||||||||||| ||||| |||| | | |||||||  || ||    
T  3597315 tggaaataagctgaaaatagcttatggccatgtcataagttatttttatcaactcttccaaacagtctcacaagtggttatatcattagataacctcaaa 3597216  T
Q  127 taagtcaattcaaa 140  Q
    ||||||||| ||||    
T  3597215 taagtcaatccaaa 3597202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 7262578 - 7262477
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| |||||||  ||| |||||||||||||| || ||||| |||||| ||||||||  || |||||  |  | |||||| |||| ||||||||||    
T  7262578 tttcataagctatcctgaagagcttgtggaaataaggtgaaaacagcttatgaacatgtcaaaagctgtttttataagctctccaaaaccgtctcaaaag 7262479  T
Q  101 tg 102  Q
    ||    
T  7262478 tg 7262477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25479591 - 25479652
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcat 62  Q
    |||||||| |||||||||||| ||| || ||||||| || |||||||| ||| |||||||||    
T  25479591 tttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcat 25479652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 33108665 - 33108612
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    |||| ||| ||||||||||||| ||||||||||||| |||| ||| ||||||||    
T  33108665 gagagcttatggaaataagttgaaaacaacttatggtcatggcatgagttgttt 33108612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47020517 - 47020578
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcat 62  Q
    |||||||| ||||| |||||| |||  |||||||||||| |||||  |||||||||||||||    
T  47020517 tttcataagctatcttagagagcttacggaaataagttgtaaacaggttatggacatgtcat 47020578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 3244935 - 3244979
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    ||||||||||||| ||| | ||||||||||||||||| |||||||    
T  3244935 tggaaataagttgaaaatagcttatggacatgtcattggttgttt 3244979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 4549266 - 4549314
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaa 75  Q
    |||||||||| || ||||||||||| |||||||||| | ||||||||||    
T  4549266 tggaaataagctgaaaacaacttatagacatgtcataaattgtttccaa 4549314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 6262047 - 6262099
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtt 70  Q
    |||| ||||||||||||||||| ||| | |||||| ||||||||| |||||||    
T  6262047 gagagcttgtggaaataagttgaaaatagcttatgaacatgtcataagttgtt 6262099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 27140492 - 27140560
Alignment:
Q  5 ataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcc 73  Q
    |||| ||||| | |||| ||| || ||||||| || |||||||||||||||||||||| || |||||||    
T  27140492 ataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttcc 27140560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 29793669 - 29793613
Alignment:
Q  90 agtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaatgggcc 146  Q
    ||||||| |||||||||| | |||||||||| || ||||||||||| ||||| ||||    
T  29793669 agtctcacaagtgtttatgtcagtagataagctcaaataagtcaatacaaattggcc 29793613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41957511 - 41957439
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcc 73  Q
    |||||||| ||||||| |||||||| || ||||||| || |||||||||||||||||||||| || |||||||    
T  41957511 tttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttcc 41957439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 36542339 - 36542207
Alignment:
Q  4 cataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgt 103  Q
    ||||| |||||||||||| ||||||||||||||||  ||||| ||| |||||||||||| || ||||||||  || ||||     || ||||| |||||     
T  36542339 cataagctatcctagagagcttgtggaaataagttaaaaacagcttctggacatgtcataagatgtttccataaaatctc----tcaatctcataagtgc 36542244  T
Q  104 ttattttagtagataagttcgaataagtcaattcaaa 140  Q
    |||| |||||||||||| || || ||| |||||||||    
T  36542243 ttatgttagtagataagctcaaacaagccaattcaaa 36542207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 4619718 - 4619808
Alignment:
Q  2 ttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagt 92  Q
    ||||||| ||||| | |||||||| |||||||||| || || || |||||| |||||||||||||||||| ||  | |||||| |||||||    
T  4619718 ttcataagctatcatggagaacttatggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaacagt 4619808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 11457147 - 11457241
Alignment:
Q  40 gaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaa 134  Q
    |||||| |||||||||||||||| |||||||||||  | |||| | ||||||||||| |||||||| |   | |||||||| || ||||||||||    
T  11457147 gaaacagcttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagctcaaataagtcaa 11457241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 38047893 - 38047817
Alignment:
Q  47 cttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttc 123  Q
    |||||||||||||||| |||||||||||  | |||||| |||||||| || ||||  ||||  ||||||||||||||    
T  38047893 cttatggacatgtcataagttgtttccataagctctcccaaacagtcacacaagtacttataatagtagataagttc 38047817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 11700398 - 11700332
Alignment:
Q  41 aaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    ||||| |||||||||||||||| |||||||||||  ||||||||  || ||||||| ||||| ||||    
T  11700398 aaacagcttatggacatgtcataagttgtttccataaactctcctcaatagtctcacaagtgcttat 11700332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 34975459 - 34975512
Alignment:
Q  86 aaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    ||||||||||| ||||| |||| |||||||||||| || ||||||||||||||||    
T  34975459 aaacagtctcataagtgattatgttagtagataagctc-aataagtcaattcaaa 34975512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 6109510 - 6109599
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    |||| ||| |||||||||| || ||||||||||||||||| |||| | || ||||||  | |||||| ||| | ||||| ||||||||||    
T  6109510 gagagcttttggaaataagctgaaaacaacttatggacatatcataatttttttccataagctctccaaaatattctcacaagtgtttat 6109599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7674658 - 7674731
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||||||| ||||| | ||||| ||||| ||||||| || ||||| |||||  ||||||||| |||||||||||    
T  7674658 tttcataagctatcttggagaatttgtgaaaataagctgaaaacaccttataaacatgtcataagttgtttcca 7674731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 27565171 - 27565126
Alignment:
Q  98 aagtgtttattttagtagataagttcgaataagtcaattcaaatgg 143  Q
    ||||||||||| ||||| |||||||| ||||||||||| |||||||    
T  27565171 aagtgtttattctagtacataagttcaaataagtcaatccaaatgg 27565126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32059419 - 32059362
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatg 58  Q
    |||||||| |||||||||||||||| | |||||||| || |||||||| ||| |||||    
T  32059419 tttcataagctatcctagagaacttatcgaaataagctgaaaacaactcatgaacatg 32059362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 29590663 - 29590623
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagtt 67  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  29590663 tggaaataagttgaaaacaacttatggacaagtcataagtt 29590623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 32172663 - 32172791
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||| |  ||||||  |||||||||| || |||   |||||||||||||||| |||||||||||  | |||||| ||||  ||||| |||    
T  32172663 tttcataagctatcatgaagaactaatggaaataagctgaaaatggcttatggacatgtcataagttgtttccataagctctcccaaactatctcacaag 32172762  T
Q  101 tgtttattttagtagataagttcgaataa 129  Q
    || ||||  ||||| ||||| || |||||    
T  32172763 tgcttatgctagtatataagctcaaataa 32172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 38766576 - 38766532
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||||||| | ||||||||||||||| |||||| |||||||||||    
T  38766576 aaataagtcgaaaacaacttatggacgtgtcataagttgtttcca 38766532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 34652096 - 34652025
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttc 72  Q
    |||||||| ||||| | |||| ||| ||||||||||||| ||||| |||||||||||||||| |||||||||    
T  34652096 tttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttc 34652025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9556249 - 9556319
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    |||||||| |||||||||| | ||| || |||||||||| || | ||||||||||||||||||||||||||    
T  9556249 tttcataagctatcctagaaagcttatgaaaataagttgaaatctacttatggacatgtcattagttgttt 9556319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 22681245 - 22681175
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    ||||||||||||||||||||||||| |||||||||| |  ||||| |||||| |||||| ||| |||||||    
T  22681245 tttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgttgttt 22681175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1939392 - 1939323
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtt 70  Q
    |||||||| |||| || |||| ||| ||||||||||||| ||||| |||||||||||||||| |||||||    
T  1939392 tttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 9478335 - 9478443
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaa 126  Q
    ||||| |||| || ||||| ||||||||||||| || |||||||| ||  |||||||  |||||||| || ||||  |||| || |||||||||||| ||    
T  9478335 tggaagtaagatgaaaacagcttatggacatgtaataagttgtttgcataaactctctcaaacagtcacacaagtacttatgttggtagataagttcaaa 9478434  T
Q  127 taagtcaat 135  Q
    |||||||||    
T  9478435 taagtcaat 9478443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 10285885 - 10285936
Alignment:
Q  16 tagagaacttgtggaaataagttggaaacaacttatggacatgtcattagtt 67  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  10285885 tagagaacttatggaaataagttgaaaacagcttatggacatgtcataagtt 10285936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 15120233 - 15120332
Alignment:
Q  41 aaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    ||||| || ||| ||||||||| |||||||||||  | |||||| ||||||  ||| || |||||||  |||||||||||||| ||||||||||| ||||    
T  15120233 aaacagctaatgaacatgtcataagttgtttccataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaa 15120332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 30552704 - 30552569
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaa-caacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaa 99  Q
    |||||||| |||||||||||| ||| |||||||||| |  ||| |||||||| |||||||||| ||||||||| |  | || ||  ||||||| ||||||    
T  30552704 tttcataaactatcctagagagcttatggaaataagctaaaaaccaacttattgacatgtcataagttgtttcgataacctatctcaaacagtttcaaaa 30552605  T
Q  100 gtgtttattttagtagataagttcgaataagtcaat 135  Q
    ||| ||||   |||||||||| || |||| ||||||    
T  30552604 gtgcttataccagtagataagctcaaatatgtcaat 30552569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 32694225 - 32694291
Alignment:
Q  4 cataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtt 70  Q
    ||||| |||||||||| |  ||||||||||||| || |||||||  |||||||||||||||||||||    
T  32694225 cataagctatcctagatagattgtggaaataagctgaaaacaacaaatggacatgtcattagttgtt 32694291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 32821819 - 32821953
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| |||||||| ||| ||| | |||||||  || ||||| |||||||||||||||| ||||||||| |  |||||| | |||||||||   ||     
T  32821819 tttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataaactcttccaaacagtcttgcaaa 32821918  T
Q  101 tgtttattttagtagataagttcgaataagtcaat 135  Q
    || |||  || ||||||||| || |||||||||||    
T  32821919 tgcttacgttggtagataagctcaaataagtcaat 32821953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 9878714 - 9878669
Alignment:
Q  29 gaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    ||||||||| | |||||||||||||||||||||| |||||||||||    
T  9878714 gaaataagtcgaaaacaacttatggacatgtcataagttgtttcca 9878669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 43456741 - 43456628
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaa 126  Q
    |||||||||| || |||||  ||||||||||||||| |||||||| ||  | ||||   ||||||||| | |||||||||| | |||| |||||||| ||    
T  43456741 tggaaataagctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataagttcaaa 43456642  T
Q  127 taagtcaattcaaa 140  Q
    ||||| ||| ||||    
T  43456641 taagtaaatccaaa 43456628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 41042056 - 41041976
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    ||||||||||||| ||||| || |||||||||| || ||||||||| |  || |||| |||||||||||| |||| |||||    
T  41042056 tggaaataagttgaaaacagctgatggacatgtaataagttgtttctataaattctctgaaacagtctcacaagtttttat 41041976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 30538204 - 30538162
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcattagttgtttc 72  Q
    ||||||| || |||||||||||||||||||||| |||||||||    
T  30538204 aaataagctgaaaacaacttatggacatgtcataagttgtttc 30538162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 7283023 - 7283080
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaa 75  Q
    |||| ||| |||| ||||| || ||||||||||||||||| |||| ||||||||||||    
T  7283023 gagagcttatggatataagatgaaaacaacttatggacatatcataagttgtttccaa 7283080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 41809296 - 41809199
Alignment:
Q  10 ctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    ||||| |||| | ||| |||||||||| |  |||||||||||| ||||||||| |||||||||||  | ||||   || |||||||| ||||||||||    
T  41809296 ctatcttagaaagcttatggaaataagctaaaaacaacttatgaacatgtcataagttgtttccacaagctcttacaatcagtctcacaagtgtttat 41809199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 10567070 - 10567162
Alignment:
Q  4 cataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctca 96  Q
    ||||| |||| || |||| |||||| |||| || || ||||||||||||  |||||||| || ||||||||  | |||||| |||||||||||    
T  10567070 cataaactattctggagagcttgtgaaaattagctgaaaacaacttatgatcatgtcataagctgtttccacaatctctcccaaacagtctca 10567162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 14451088 - 14451040
Alignment:
Q  23 cttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    |||||||||||||| || ||||| ||||||| |||||||| ||||||||    
T  14451088 cttgtggaaataagctgaaaacagcttatggtcatgtcataagttgttt 14451040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 29936040 - 29936076
Alignment:
Q  38 tggaaacaacttatggacatgtcattagttgtttcca 74  Q
    ||||||||||||||||||||||| | |||||||||||    
T  29936040 tggaaacaacttatggacatgtcttaagttgtttcca 29936076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 32615957 - 32615989
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgt 59  Q
    ||||||||||||| |||||||||||||||||||    
T  32615957 tggaaataagttgaaaacaacttatggacatgt 32615989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 35329861 - 35329805
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||| ||| |||||||||| ||||||||||||| || ||||||||||  ||||||||    
T  35329861 gagagcttatggaaataagctggaaacaacttaggggcatgtcattaactgtttcca 35329805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 40943935 - 40943979
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcat 62  Q
    ||||||||||||||| ||||||||| |||||| ||||||| ||||    
T  40943935 gagaacttgtggaaacaagttggaagcaacttgtggacatatcat 40943979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43141881 - 43141953
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcc 73  Q
    |||||||| |||||||  |||  || |||||||||  || ||||||||||||| |||||||| ||||||||||    
T  43141881 tttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttatgggcatgtcataagttgtttcc 43141953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 38630 - 38708
Alignment:
Q  29 gaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||  |||||  | |||||| |||||| ||||||||    
T  38630 gaaataagttagaaacaacttatggacatgtcataagttatttccataaactcctccaaacagactcaaatgtgtttat 38708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2996583 - 2996712
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||| | |||| | | || |||||||||| ||| | |||||||||||||||| |||||||| ||  | |||||  |||||||||||||||    
T  2996583 tttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaag 2996682  T
Q  101 tgtttattttagtagataagttcgaataag 130  Q
    || |||| | | || |||||||| ||||||    
T  2996683 tgcttatgtcaataaataagttcaaataag 2996712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 11264311 - 11264428
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| | |||||||||| ||| ||||||||||||| |||||  ||||||||||||||| ||||| ||| |    |||||| ||||||||||| |      
T  11264311 tttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataagttgattctatatgctctcccaaacagtctcacaga 11264410  T
Q  101 tgtttattttagtagata 118  Q
    |||||||  |||||||||    
T  11264411 tgtttatgctagtagata 11264428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 27123395 - 27123312
Alignment:
Q  18 gagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagt 101  Q
    |||| ||| ||||||||||||| ||||||||||  |||||||||| |||||||||||  | |||||  ||||||||||| ||||    
T  27123395 gagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagt 27123312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 43932463 - 43932538
Alignment:
Q  19 agaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtct 94  Q
    |||||||||| ||||||| || |||||||||||||||||||||| || || ||||   |||||||| |||||||||    
T  43932463 agaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccgtaaactctcctaaacagtct 43932538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 6987792 - 6987706
Alignment:
Q  10 ctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctca 96  Q
    ||||||| |||| ||| ||||||||||||| ||| |  ||||||||||||||| |||||| ||||  | |||||| |||||||||||    
T  6987792 ctatcctggagagcttatggaaataagttgaaaatagtttatggacatgtcataagttgtatccataagctctcccaaacagtctca 6987706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1137722 - 1137827
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| |||||| ||||| ||| |||||||||  || |||||||||||| ||||||||| || ||||| ||  |  ||||| ||||||| ||| |||    
T  1137722 tttcataaactatccaagagagcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaag 1137821  T
Q  101 tgttta 106  Q
    ||||||    
T  1137822 tgttta 1137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 20656072 - 20656116
Alignment:
Q  26 gtggaaataagttggaaacaacttatggacatgtcattagttgtt 70  Q
    |||||||||||||| | |||||||||||||||||||| |||||||    
T  20656072 gtggaaataagttgaagacaacttatggacatgtcataagttgtt 20656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 23990727 - 23990683
Alignment:
Q  17 agagaacttgtggaaataagttggaaacaacttatggacatgtca 61  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||||    
T  23990727 agagagcttatggaaataagttggaaacaacttatagacatgtca 23990683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 29263380 - 29263451
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttc 72  Q
    |||||||| |||||||  ||| |||||||||||||| || |||||||||||| |||| |||| || ||||||    
T  29263380 tttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttatgaacatatcataagctgtttc 29263451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 1965955 - 1966021
Alignment:
Q  5 ataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    |||| |||||||||| | ||| ||||||||||||  ||||| |||||| ||||||||| ||||||||    
T  1965955 ataagctatcctagaaatcttctggaaataagttaaaaacagcttatgaacatgtcataagttgttt 1966021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 19304962 - 19305076
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaa 126  Q
    |||||| ||| || |||||||||||||||||||||| || ||||||||  || ||||| | ||| ||||| || || |||| | | |||||||  || ||    
T  19304962 tggaaacaagctgaaaacaacttatggacatgtcataagctgtttccacaaattctcccacacaatctcacaaatgcttatgtcaatagataatctcaaa 19305061  T
Q  127 taagtcaattcaaat 141  Q
    ||||||||| |||||    
T  19305062 taagtcaatccaaat 19305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 29375934 - 29376052
Alignment:
Q  22 acttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagt 121  Q
    |||| ||||||||||||| ||||||  ||||||| |||||| || ||||||||  | ||||| |||| ||  ||| ||||| |||| | | |||||||||    
T  29375934 acttatggaaataagttgaaaacaaaatatggacctgtcataagctgtttccataagctctctgaaatagcgtcacaagtgcttatgtcaatagataagt 29376033  T
Q  122 tcgaataagtcaattcaaa 140  Q
    || |||||| |||| ||||    
T  29376034 tcaaataagccaatccaaa 29376052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29563464 - 29563414
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttat 51  Q
    ||||| || |||| ||||||||||||||| ||||||||| |||||||||||    
T  29563464 tttcagaagctattctagagaacttgtgggaataagttgaaaacaacttat 29563414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 41097285 - 41097215
Alignment:
Q  32 ataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtg 102  Q
    |||||||| ||| | |||||||||||||||||||||||||| |  | ||||||  |||||||||| |||||    
T  41097285 ataagttgaaaatagcttatggacatgtcattagttgtttctataagctctcccgaacagtctcacaagtg 41097215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 23984032 - 23983987
Alignment:
Q  17 agagaacttgtggaaataagttggaaacaacttatggacatgtcat 62  Q
    ||||| ||| ||||||||||||||||| ||||||| ||||||||||    
T  23984032 agagagcttatggaaataagttggaaaaaacttatagacatgtcat 23983987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 28614864 - 28614795
Alignment:
Q  5 ataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||| |||||||||||||||| || ||||||| || ||| | |||||||| ||||||| | |||||||||    
T  28614864 ataagctatcctagagaacttatgaaaataagctgaaaagagcttatggatatgtcataaattgtttcca 28614795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 45927385 - 45927494
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaa 126  Q
    |||||||||| || ||||| ||||||   ||||||| | |||||||||  | || |  |||||||||||||||| |||||| ||| |||||||  || ||    
T  45927385 tggaaataagctgaaaacagcttatgcgtatgtcatgaattgtttccacaagctttgtgaaacagtctcaaaagggtttatgttaatagataaactcaaa 45927484  T
Q  127 taagtcaatt 136  Q
    ||||||||||    
T  45927485 taagtcaatt 45927494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 6428071 - 6428167
Alignment:
Q  44 caacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    ||||||||||||||||||| |||||||| ||  | |||||  |||| |||||| ||||| ||||   | || ||||| || ||||||||||||||||    
T  6428071 caacttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagtcaattcaaa 6428167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 18628535 - 18628479
Alignment:
Q  79 ctctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaat 135  Q
    |||||| ||||||||||| |||||||||| | |||||||||| || |||| ||||||    
T  18628535 ctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaatacgtcaat 18628479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 29467675 - 29467623
Alignment:
Q  10 ctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcat 62  Q
    ||||||||||||  || |||||||||| || ||||| ||||||||||||||||    
T  29467675 ctatcctagagagtttatggaaataagctgaaaacagcttatggacatgtcat 29467623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 54277297 - 54277249
Alignment:
Q  87 aacagtctcaaaagtgtttattttagtagataagttcgaataagtcaat 135  Q
    |||||||||| |||||||||| | | ||||||||||| |||||||||||    
T  54277297 aacagtctcataagtgtttatgtcactagataagttcaaataagtcaat 54277249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 10651 - 10607
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  10651 tggaaataagctgaaaacaacttatggacatgtcattagttgttt 10607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 6950342 - 6950466
Alignment:
Q  11 tatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttatttt 110  Q
    ||||||| ||| ||| |||||||||| || ||||||||||| ||||||||||  ||||||| ||  | |||||| ||||| ||||| || |||||||       
T  6950342 tatcctaaagagcttatggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgcc 6950441  T
Q  111 agtagataagttcgaataagtcaat 135  Q
    |||||||||  || |||||||||||    
T  6950442 agtagataaactcaaataagtcaat 6950466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30389109 - 30389173
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattag 65  Q
    |||||||| || ||||||||||||| || ||||||| || |||||||||||| ||||||||||||    
T  30389109 tttcataagctttcctagagaacttatgaaaataagctgaaaacaacttatgaacatgtcattag 30389173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 8255429 - 8255475
Alignment:
Q  28 ggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    ||||||||| || |||||||||||| |||||||||||||||||||||    
T  8255429 ggaaataaggtgaaaacaacttatgcacatgtcattagttgtttcca 8255475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 14949876 - 14949982
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| |||||||| |||  || | |||||||| || ||||| |||||||||||||||| |||| ||| ||  | |||||| ||||||||||| ||     
T  14949876 tttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaaa 14949975  T
Q  101 tgtttat 107  Q
    |||||||    
T  14949976 tgtttat 14949982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 4763950 - 4764043
Alignment:
Q  47 cttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    ||||||||||||||||||| ||||| ||| | |||||  ||| ||||||| | ||| ||||  |||| ||||||||| ||||||||||| ||||    
T  4763950 cttatggacatgtcattagatgttttcaaaagctctcttaaatagtctcataggtgcttatgctagtggataagttcaaataagtcaatccaaa 4764043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9541056 - 9540983
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||||||| |||||||||||| ||| || ||||||| || | |||| ||||||||||||||| || ||||||||    
T  9541056 tttcataagctatcctagagagcttttgaaaataagctgaacacaaattatggacatgtcataagatgtttcca 9540983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 39551269 - 39551129
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| || |||| |||| ||| |  |||||||||  ||||| ||| |||||||||||| |||||||||||  || ||||| ||||||| ||| ||     
T  39551269 tttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataagttgtttccataaattctcccaaacagtttcacaaa 39551170  T
Q  101 tgtttattttagtagataagttcgaataagtcaattcaaat 141  Q
    || |||| |  ||||||||  || ||||||||||| |||||    
T  39551169 tgcttatatccgtagataatctcaaataagtcaatccaaat 39551129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 9700027 - 9700150
Alignment:
Q  17 agagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtaga 116  Q
    ||||| ||| || ||||||| || ||||| |||||||||||||||| | ||| || ||  | |||||  ||| ||||||| ||||||||||  |||||||    
T  9700027 agagagcttatgaaaataaggtgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtaga 9700126  T
Q  117 taagttcgaataagtcaattcaaa 140  Q
    |||| || ||||||| ||| ||||    
T  9700127 taagctcaaataagttaatccaaa 9700150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 11415164 - 11415283
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||||||||||  ||||| ||||||| ||  || | ||||||||||||| || || ||||||||  |||||||  ||||| ||||| |||    
T  11415164 tttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataagctgtttccataaactctctaaaacaatctcacaag 11415263  T
Q  101 tgtttattttagtagataag 120  Q
    |  |||| |||||| |||||    
T  11415264 tacttatgttagtaaataag 11415283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 25869300 - 25869253
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||||||||| || |||||||||||||||||||||| |||| ||||||    
T  25869300 tggaaataagctgaaaacaacttatggacatgtcataagttatttcca 25869253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30277305 - 30277246
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtc 60  Q
    |||||||| ||||||||||||  || |||||||||| || ||||||||||||| ||||||    
T  30277305 tttcataagctatcctagagagtttatggaaataagctgaaaacaacttatggccatgtc 30277246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 1112256 - 1112318
Alignment:
Q  12 atcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    ||||| |||||||| ||||||||||||| |||||| |||||  || ||||| |||||||||||    
T  1112256 atcctggagaacttatggaaataagttgaaaacaagttatgagcaggtcataagttgtttcca 1112318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 7918478 - 7918412
Alignment:
Q  29 gaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctc 95  Q
    ||||||||||||||||| |||||| ||||||| | |||||||| ||  | |||||| ||||||||||    
T  7918478 gaaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctcccaaacagtctc 7918412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 11569517 - 11569411
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| ||||| | ||||  || || ||||||| || |||||||||||| ||||||||| || ||||||||  | |||||  ||||||||||| |||    
T  11569517 tttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaag 11569418  T
Q  101 tgtttat 107  Q
    || ||||    
T  11569417 tggttat 11569411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 4055676 - 4055547
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaag 100  Q
    |||||||| |||||  ||||| |||  ||||||||| || |||||  ||||||||||||||| |||| |||| |  |||||||| ||||||| | | |||    
T  4055676 tttcataagctatctcagagagcttaaggaaataagctgaaaacagtttatggacatgtcataagttatttctataaactctcccaaacagttttacaag 4055577  T
Q  101 tgtttattttagtagataagttcgaataag 130  Q
      |||||  ||| |||||||||| ||||||    
T  4055576 catttataatagcagataagttcaaataag 4055547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 7918763 - 7918703
Alignment:
Q  79 ctctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 140  Q
    |||||| ||||||||||| ||||||||||  |||||||||||||  ||||| ||||||||||    
T  7918763 ctctcccaaacagtctcacaagtgtttatgctagtagataagtttaaataa-tcaattcaaa 7918703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 3600769 - 3600737
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcat 62  Q
    |||||||||| ||||||||||||||||||||||    
T  3600769 aaataagttgaaaacaacttatggacatgtcat 3600737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 11185257 - 11185305
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaa 75  Q
    ||||||||||||| |||||||||||| |||||| || || |||||||||    
T  11185257 tggaaataagttgaaaacaacttatgaacatgttataagatgtttccaa 11185305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 13000458 - 13000378
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    |||||||||| || ||||||||| |||||||||||| ||||||| |||  ||||||   ||| ||||||| ||||| ||||    
T  13000458 tggaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgcttat 13000378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 14339636 - 14339604
Alignment:
Q  30 aaataagttggaaacaacttatggacatgtcat 62  Q
    |||||||||| ||||||||||||||||||||||    
T  14339636 aaataagttgaaaacaacttatggacatgtcat 14339604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18931358 - 18931322
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagt 37  Q
    |||||||| |||||||||||||||||| |||||||||    
T  18931358 tttcataagctatcctagagaacttgttgaaataagt 18931322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 30191175 - 30191095
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 107  Q
    |||||||||| || |||||| || || ||||||||| |||||||||||  | |||||| ||||||||| | ||||| ||||    
T  30191175 tggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttat 30191095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 41606953 - 41606893
Alignment:
Q  11 tatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 71  Q
    ||||||||||| ||| |||||||||| || ||||||||| || ||||||||| || |||||    
T  41606953 tatcctagagagcttatggaaataagctgaaaacaacttttgaacatgtcataagctgttt 41606893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 41620311 - 41620223
Alignment:
Q  41 aaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataa 129  Q
    |||||||||||||||||||||| | |||||||||  |||| |||  ||||| |||| | ||||| || | ||||| ||||||| |||||    
T  41620311 aaacaacttatggacatgtcataatttgtttccataaactttccctaacagcctcacaggtgttcatgtcagtaggtaagttcaaataa 41620223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 43208131 - 43208079
Alignment:
Q  86 aaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattca 138  Q
    |||||||||||  ||||| ||| | ||||||||||||| ||||||||||||||    
T  43208131 aaacagtctcagtagtgtgtatgtcagtagataagttcaaataagtcaattca 43208079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 44401582 - 44401689
Alignment:
Q  12 atcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttatttta 111  Q
    ||||| |||||||| |||||||||| || ||||||  |||| ||||||| | ||||||||| |  |||| ||| ||||||||||| |||||| |||   |    
T  44401582 atcctggagaacttatggaaataagctgaaaacaatgtatgaacatgtc-taagttgtttctataaactatcccaaacagtctcacaagtgtatatgcca 44401680  T
Q  112 gtagataag 120  Q
    |||||||||    
T  44401681 gtagataag 44401689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 12755 - 12691
Alignment:
Q  10 ctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    ||||| |||||| ||| ||||  |||| || |||||||||||||||||||||| |||||||||||    
T  12755 ctatcttagagagcttatggagctaagctgaaaacaacttatggacatgtcataagttgtttcca 12691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 33931 - 33838
Alignment:
Q  42 aacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaatt 136  Q
    |||||||||||||||| |||| || | ||||||  |||||||| ||||| |||| |||| | |||| | ||||||||| ||| ||||||||||||    
T  33931 aacaacttatggacatatcataagctctttccacaaactctcctaaacaatctc-aaagagcttatgtcagtagataaattcaaataagtcaatt 33838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 16146 - 16179
Alignment:
Q  27 tggaaataagttggaaacaacttatggacatgtc 60  Q
    ||||||||||||| ||||||||||||||||||||    
T  16146 tggaaataagttgaaaacaacttatggacatgtc 16179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 306336 - 306409
Alignment:
Q  1 tttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcca 74  Q
    |||||||| |||||||||||| ||| || || |||| || ||||| ||||||| |||||||| || ||||||||    
T  306336 tttcataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataagctgtttcca 306409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 27610 - 27686
Alignment:
Q  25 tgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagt 101  Q
    |||||||||||| || ||||||||||| | |||||||| || | ||||||  | |||||| ||||||||||| ||||    
T  27610 tgtggaaataagctgaaaacaacttatagccatgtcataagctatttccataagctctcccaaacagtctcagaagt 27686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University