View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_low_39 (Length: 234)
Name: NF3686_low_39
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4314850 - 4315069
Alignment:
| Q |
1 |
acatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314850 |
acatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatg |
4314949 |
T |
|
| Q |
101 |
gcgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagatt |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314950 |
gggatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagatt |
4315049 |
T |
|
| Q |
201 |
cgccggcatctagagaggtg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
4315050 |
cgccggcatctagagaggtg |
4315069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 4305992 - 4306207
Alignment:
| Q |
5 |
gcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatggcga |
104 |
Q |
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||||||||||| |||||||| ||||||||||||||||||| |||||||||| |||||||||| | |||||||||| ||||||||||||||||||| || |
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| T |
4305992 |
gcccatgcttgcacatcaaaattttgctttatattgtcattgttgtacacaaattgggctaatatgatttttcccaccccacccatgccaactatgggga |
4306091 |
T |
|
| Q |
105 |
tcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattcgcc |
204 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
4306092 |
tcacagtcacacaagtcttatcatcaacatgatcatcatctaacagtaacttgagaatgaccattttgtcttgatccctaccaaataagttagattcacc |
4306191 |
T |
|
| Q |
205 |
ggcatctagagaggtg |
220 |
Q |
| |
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|||||||||||||||| |
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| T |
4306192 |
ggcatctagagaggtg |
4306207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 4246512 - 4246314
Alignment:
| Q |
6 |
cccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatggcgat |
105 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| || |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
4246512 |
cccatgcttgaacatcaaatttctgctgtatactg-catgattgtatacagattgggctaaagtgatttttcccacaccacccatgccaactatggggat |
4246414 |
T |
|
| Q |
106 |
cacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattcgccg |
205 |
Q |
| |
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|||| ||| || |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4246413 |
cacagtcatacaagtcttatcatcaacatgatcatcgtct---------------atggcaattttgtcttgatccctaccaaataagttagattcgccg |
4246329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 4253631 - 4253446
Alignment:
| Q |
5 |
gcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatggcga |
104 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| || |
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| T |
4253631 |
gcccatgcttgaacatcaaacttctgctttatactgtcatggttgtacacagattgggctaaaattgtttttcccacaccacccataccaactatgggga |
4253532 |
T |
|
| Q |
105 |
tcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagat |
199 |
Q |
| |
|
|||| | ||||||| || || || |||||||||||||||||| ||||| |||||| |||||||| |||||||||||||| ||||||| |
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|
| T |
4253531 |
------tcacgcaagtctta-cagca--atcatcatcatctaacagtaatttgagtatggcctttttgtctgcatccctaccaaatatgttagat |
4253446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 41933075 - 41932861
Alignment:
| Q |
5 |
gcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatggcga |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || |
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| T |
41933075 |
gcccatgcttgaacatcaaacttttgctttatattgtcatggttgtacacagattgggctaaagtggtttttcccaccccacccatgccaactatgggga |
41932976 |
T |
|
| Q |
105 |
tcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattcgcc |
204 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||| || ||||||| | |||||||||| |
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| T |
41932975 |
tcacactcacacaagtcttatcatcaacatgatcatcatctaagagtaacttgagtatggcttctttgtctttatctcttccaaatatgctagattcgcc |
41932876 |
T |
|
| Q |
205 |
ggcatctagagaggt |
219 |
Q |
| |
|
||||| |||||||| |
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|
| T |
41932875 |
agcatcaagagaggt |
41932861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 34802896 - 34803100
Alignment:
| Q |
6 |
cccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatggcgat |
105 |
Q |
| |
|
|||||||||||||| | ||||| | ||||||| |||||||| |||||||||||||||||||||| |||||||| | |||||||||| |||||||| ||| |
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| T |
34802896 |
cccatgcttgaacaccgaatttcttctttatactgtcatggatgtacacagattgggctaaagtggtttttcctattccacccatgctaactatggggat |
34802995 |
T |
|
| Q |
106 |
cacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattcgccg |
205 |
Q |
| |
|
|||||| ||||||||||| | ||| | |||||||||||||||| ||||| || ||| |||||||| |||||| ||||||| |||| || ||| |
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|
| T |
34802996 |
----ctcaca--agtcttatcattatcatcaccatcatctaacagtaatttgagtatcgcctctttgtctttatccctgccaaatatgttacat---ccg |
34803086 |
T |
|
| Q |
206 |
gcatctagagaggt |
219 |
Q |
| |
|
|||||||||||||| |
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|
| T |
34803087 |
gcatctagagaggt |
34803100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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